Inhaled multi-walled carbon nanotubes differently modulate global gene and protein expression in rat lungs

Genes expression profiling of alveolar macrophages exposed to non-functionalized, anionic and cationic multi-walled carbon nanotubes shows three different mechanisms of toxicity

(2020) Sara Nahle et al.   JOURNAL OF NANOBIOTECHNOLOGY

State of knowledge on the occupational exposure to carbon nanotubes

(2020) I. Guseva Canu et al.   INTERNATIONAL JOURNAL OF HYGIENE AND ENVIRONMENTAL HEALTH

Transcriptomics in Toxicogenomics, Part III: Data Modelling for Risk Assessment

(2020) Angela Serra et al.   Nanomaterials

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

(2019) Uku Raudvere et al.   NUCLEIC ACIDS RESEARCH

An integrative computational approach for a prioritization of key transcription regulators associated with nanomaterial-induced toxicity

(2019) Vadim Zhernovkov et al.   TOXICOLOGICAL SCIENCES

Pulmonary toxicity of two different multi-walled carbon nanotubes in rat: Comparison between intratracheal instillation and inhalation exposure

(2019) Laurent Gaté et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

SOX13 dependent PAX8 expression promotes the proliferation of gastric carcinoma cells

(2019) Liang-Yu Bie et al.   Artificial Cells Nanomedicine and Biotechnology

A spatially restricted fibrotic niche in pulmonary fibrosis is sustained by M-CSF/M-CSFR signaling in monocyte-derived alveolar macrophages

(2019) Nikita Joshi et al.   EUROPEAN RESPIRATORY JOURNAL

Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets

(2018) Ricard Argelaguet et al.   Molecular Systems Biology

Regulation of the master regulator FOXM1 in cancer

(2018) Guo-Bin Liao et al.   Cell Communication and Signaling

Advances and challenges in targeting IRF5, a key regulator of inflammation

(2018) Hannah Almuttaqi et al.   FEBS Journal

ELF3, ELF5, EHF and SPDEF Transcription Factors in Tissue Homeostasis and Cancer

(2018) Ian Luk et al.   MOLECULES

AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors

(2018) Hui Hu et al.   NUCLEIC ACIDS RESEARCH

Short- and long-term gene expression profiles induced by inhaled TiO2 nanostructured aerosol in rat lung

(2018) Laëtitia Chézeau et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

The Gene Ontology Resource: 20 years and still GOing strong

(2018)   NUCLEIC ACIDS RESEARCH

MYBL2 (B-Myb): a central regulator of cell proliferation, cell survival and differentiation involved in tumorigenesis

(2017) Julian Musa et al.   Cell Death & Disease

Multi-walled carbon nanotube-physicochemical properties predict the systemic acute phase response following pulmonary exposure in mice

(2017) Sarah S. Poulsen et al.   PLoS One

The transcription factor MafB promotes anti-inflammatory M2 polarization and cholesterol efflux in macrophages

(2017) Hwijin Kim   Scientific Reports

Multiwalled carbon nanotubes intratracheally instilled into the rat lung induce development of pleural malignant mesothelioma and lung tumors

(2016) Masumi Suzui et al.   CANCER SCIENCE

TFEB at a glance

(2016) Gennaro Napolitano et al.   JOURNAL OF CELL SCIENCE

Toxicogenomics analysis of mouse lung responses following exposure to titanium dioxide nanomaterials reveal their disease potential at high doses

(2016) Luna Rahman et al.   MUTAGENESIS

Multi-walled carbon nanotube physicochemical properties predict pulmonary inflammation and genotoxicity

(2016) Sarah S. Poulsen et al.   Nanotoxicology

2016 update of the PRIDE database and its related tools

(2016) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Size effects of single-walled carbon nanotubes onin vivoandin vitropulmonary toxicity

(2015) Katsuhide Fujita et al.   INHALATION TOXICOLOGY

Lipopolysaccharide-induced tumor necrosis factor-α factor enhances inflammation and is associated with cancer (Review)

(2015) JUNRONG ZOU et al.   Molecular Medicine Reports

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

HMG20A is required for SNAI1-mediated epithelial to mesenchymal transition

(2015) S Rivero et al.   ONCOGENE

Lung carcinogenicity of inhaled multi-walled carbon nanotube in rats

(2015) Tatsuya Kasai et al.   Particle and Fibre Toxicology

MWCNTs of different physicochemical properties cause similar inflammatory responses, but differences in transcriptional and histological markers of fibrosis in mouse lungs

(2015) Sarah S. Poulsen et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

Thirteen-week study of toxicity of fiber-like multi-walled carbon nanotubes with whole-body inhalation exposure in rats

(2014) Tatsuya Kasai et al.   Nanotoxicology

The carcinogenic effect of various multi-walled carbon nanotubes (MWCNTs) after intraperitoneal injection in rats

(2014) Susanne Rittinghausen et al.   Particle and Fibre Toxicology

MYC Activation Is a Hallmark of Cancer Initiation and Maintenance

(2014) M. Gabay et al.   Cold Spring Harbor Perspectives in Medicine

System-based identification of toxicity pathways associated with multi-walled carbon nanotube-induced pathological responses

(2013) Brandi N. Snyder-Talkington et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Acute pulmonary dose–responses to inhaled multi-walled carbon nanotubes

(2012) Dale W. Porter et al.   Nanotoxicology

Rare and Frequent Promoter Methylation, Respectively, of TSHZ2 and 3 Genes That Are Both Downregulated in Expression in Breast and Prostate Cancers

(2011) Miyako Yamamoto et al.   PLoS One

GLay: community structure analysis of biological networks

(2010) G. Su et al.   BIOINFORMATICS

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

(2010) Vân Anh Huynh-Thu et al.   PLoS One

Three-amino-acid-loop-extension homeodomain factor Meis3 regulates cell survival via PDK1

(2010) J. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of tubby and tubby-like protein 1 as eat-me signals by phage display

(2009) Nora B. Caberoy et al.   EXPERIMENTAL CELL RESEARCH

Absence of Carcinogenic Response to Multiwall Carbon Nanotubes in a 2-Year Bioassay in the Peritoneal Cavity of the Rat

(2009) Julie Muller et al.   TOXICOLOGICAL SCIENCES

Pulmonary toxicity of multi-walled carbon nanotubes (Baytubes®) relative to α-quartz following a single 6h inhalation exposure of rats and a 3 months post-exposure period

(2009) Heidrun Ellinger-Ziegelbauer et al.   TOXICOLOGY