Phylogenomics of Gesneriaceae using targeted capture of nuclear genes
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Phylogenomics of Gesneriaceae using targeted capture of nuclear genes
Authors
Keywords
African violet, Phylogenetics, Probe design, Sequence capture, Systematics, Target enrichment
Journal
MOLECULAR PHYLOGENETICS AND EVOLUTION
Volume -, Issue -, Pages 107068
Publisher
Elsevier BV
Online
2021-01-09
DOI
10.1016/j.ympev.2021.107068
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Tackling Rapid Radiations With Targeted Sequencing
- (2020) Isabel Larridon et al. Frontiers in Plant Science
- ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy
- (2020) Chao Zhang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes
- (2019) Thomas L. P. Couvreur et al. Frontiers in Plant Science
- Tracking temporal shifts in area, biomes, and pollinators in the radiation of Salvia (sages) across continents: leveraging anchored hybrid enrichment and targeted sequence data
- (2019) Ricardo Kriebel et al. AMERICAN JOURNAL OF BOTANY
- Diversification of Hawaiian Cyrtandra (Gesneriaceae) under the influence of incomplete lineage sorting and hybridization
- (2019) Joseph A. Kleinkopf et al. Journal of Systematics and Evolution
- A customized nuclear target enrichment approach for developing a phylogenomic baseline for Dioscorea yams (Dioscoreaceae)
- (2019) Marybel Soto Gomez et al. Applications in Plant Sciences
- Quartet-based computations of internode certainty provide robust measures of phylogenetic incongruence
- (2019) Xiaofan Zhou et al. SYSTEMATIC BIOLOGY
- The Family Placement of Cyrtandromoea
- (2019) Javier A. Luna et al. SYSTEMATIC BOTANY
- Targeted Capture of Hundreds of Nuclear Genes Unravels Phylogenetic Relationships of the Diverse Neotropical Palm Tribe Geonomateae
- (2019) Oriane Loiseau et al. Frontiers in Plant Science
- A phylogenomic analysis of Nepenthes (Nepenthaceae)
- (2019) Bruce Murphy et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Phylogenomic analyses reveal extensive gene flow within the magic flowers (Achimenes )
- (2018) Wade R. Roberts et al. AMERICAN JOURNAL OF BOTANY
- A roadmap for global synthesis of the plant tree of life
- (2018) Wolf L. Eiserhardt et al. AMERICAN JOURNAL OF BOTANY
- ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
- (2018) Chao Zhang et al. BMC BIOINFORMATICS
- Exploring data processing strategies in NGS target enrichment to disentangle radiations in the tribe Cardueae (Compositae)
- (2018) Sonia Herrando-Moraira et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Practical considerations for plant phylogenomics
- (2018) Michael R. McKain et al. Applications in Plant Sciences
- A dedicated target capture approach reveals variable genetic markers across micro- and macro-evolutionary time scales in palms
- (2018) Marylaure de La Harpe et al. Molecular Ecology Resources
- A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering
- (2018) Matthew G Johnson et al. SYSTEMATIC BIOLOGY
- A pilot study applying the plant Anchored Hybrid Enrichment method to New World sages ( Salvia subgenus Calosphace ; Lamiaceae)
- (2017) Itzi Fragoso-Martínez et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Targeted Enrichment of Large Gene Families for Phylogenetic Inference: Phylogeny and Molecular Evolution of Photosynthesis Genes in the Portullugo Clade (Caryophyllales)
- (2017) Abigail J Moore et al. SYSTEMATIC BIOLOGY
- Resolving Rapid Radiations within Angiosperm Families Using Anchored Phylogenomics
- (2017) Étienne Léveillé-Bourret et al. SYSTEMATIC BIOLOGY
- MultiQC: summarize analysis results for multiple tools and samples in a single report
- (2016) Philip Ewels et al. BIOINFORMATICS
- An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
- (2016) BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- Distinct Processes Drive Diversification in Different Clades of Gesneriaceae
- (2016) Eric H. Roalson et al. SYSTEMATIC BIOLOGY
- Taxonomic Revision and Phylogenetic Position of the Brazilian Endemic Genus Sphaerorrhiza (Sphaerorrhizinae, Gesneriaceae) Including Two New Species
- (2016) Andréa Onofre de Araujo et al. SYSTEMATIC BOTANY
- HybPiper: Extracting Coding Sequence and Introns for Phylogenetics from High-Throughput Sequencing Reads Using Target Enrichment
- (2016) Matthew G. Johnson et al. Applications in Plant Sciences
- AMAS: a fast tool for alignment manipulation and computing of summary statistics
- (2016) Marek L. Borowiec PeerJ
- Phylogenomic analyses of species relationships in the genusSabal(Arecaceae) using targeted sequence capture
- (2015) Karolina Heyduk et al. BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- The resurrection genome ofBoea hygrometrica: A blueprint for survival of dehydration
- (2015) Lihong Xiao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Streptocarpus redefined to include all Afro-Malagasy Gesneriaceae: Molecular phylogenies prove congruent with geographical distribution and basic chromosome numbers and uncover remarkable morphological homoplasies
- (2015) Kanae Nishii et al. TAXON
- Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae)
- (2015) James A. Nicholls et al. Frontiers in Plant Science
- Phylogeny of Lamiidae
- (2014) Nancy F. Refulio-Rodriguez et al. AMERICAN JOURNAL OF BOTANY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Orthology Inference in Nonmodel Organisms Using Transcriptomes and Low-Coverage Genomes: Improving Accuracy and Matrix Occupancy for Phylogenomics
- (2014) Ya Yang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Paraphyly of Section Stygnanthe (Columnea, Gesneriaceae) and a Revision of the Species of Section Angustiflorae, a New Section Inferred from ITS and Chloroplast DNA Data
- (2014) Lacie J. Schulte et al. SYSTEMATIC BOTANY
- A Target Enrichment Method for Gathering Phylogenetic Information from Hundreds of Loci: An Example from the Compositae
- (2014) Jennifer R. Mandel et al. Applications in Plant Sciences
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
- (2013) Henrik Nordberg et al. NUCLEIC ACIDS RESEARCH
- De Novo Assembly of the Transcriptome of the Non-Model Plant Streptocarpus rexii Employing a Novel Heuristic to Recover Locus-Specific Transcript Clusters
- (2013) Matteo Chiara et al. PLoS One
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Temporal and spatial origin of Gesneriaceae in the New World inferred from plastid DNA sequences
- (2012) Mathieu Perret et al. BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture
- (2012) N. Rohland et al. GENOME RESEARCH
- Phylogeny of a Neotropical Clade in the Gesneriaceae: More Tales of Convergent Evolution
- (2012) John L. Clark et al. INTERNATIONAL JOURNAL OF PLANT SCIENCES
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Angiosperm phylogeny: 17 genes, 640 taxa
- (2011) Douglas E. Soltis et al. AMERICAN JOURNAL OF BOTANY
- A molecular phylogenetic assessment of the advanced Asiatic and Malesian didymocarpoid Gesneriaceae with focus on non-monophyletic and monotypic genera
- (2011) Michael Möller et al. PLANT SYSTEMATICS AND EVOLUTION
- A preliminary phylogeny of the ‘didymocarpoid Gesneriaceae’ based on three molecular data sets: Incongruence with available tribal classifications
- (2009) Michael Möller et al. AMERICAN JOURNAL OF BOTANY
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
- (2009) Matthew Parks et al. BMC BIOLOGY
- Spliceosomal introns as tools for genomic and evolutionary analysis
- (2008) M. Irimia et al. NUCLEIC ACIDS RESEARCH
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started