UCE data reveal multiple origins of rose gallers in North America: Global phylogeny of Diplolepis Geoffroy (Hymenoptera: Cynipidae)

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

A new Diplolepis Geoffroy (Hymenoptera, Cynipidae, Diplolepidini) species from China: a rare example of a rose gall-inducer of economic significance

(2020) Juli Pujade-Villar et al.   ZooKeys

Optimised DNA extraction and library preparation for minute arthropods: application to target enrichment in chalcid wasps used for biocontrol

(2019) Astrid Cruaud et al.   Molecular Ecology Resources

Parasitoid wasps associated with Diplolepis galls (Hymenoptera: Cynipidae) in Turkey: an updated checklist and report of three non-regular species

(2019) Özlem Mete et al.   PHYTOPARASITICA

DNA barcodes reveal inconsistent species boundaries in Diplolepis rose gall wasps and their Periclistus inquilines (Hymenoptera: Cynipidae)

(2019) Y. Miles Zhang et al.   CANADIAN ENTOMOLOGIST

Sequence capture phylogenomics of historical ethanol‐preserved museum specimens: Unlocking the rest of the vault

(2019) Shahan Derkarabetian et al.   Molecular Ecology Resources

Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data

(2019) Li-Gen Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

RASP 4: ancestral state reconstruction tool for multiple genes and characters

(2019) Yan Yu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic dissection of an extended phenotype: Oak galling by a cynipid gall wasp

(2019) Jack Hearn et al.   PLoS Genetics

Adapterama I: universal stubs and primers for 384 unique dual-indexed or 147,456 combinatorially-indexed Illumina libraries (iTru & iNext)

(2019) Travis C. Glenn et al.   PeerJ

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

(2018) Chao Zhang et al.   BMC BIOINFORMATICS

Conceptual and statistical problems with the DEC+J model of founder-event speciation and its comparison with DEC via model selection

(2018) Richard H. Ree et al.   JOURNAL OF BIOGEOGRAPHY

Estimating Improved Partitioning Schemes for Ultraconserved Elements

(2018) Victor A Tagliacollo et al.   MOLECULAR BIOLOGY AND EVOLUTION

On the universality of target-enrichment baits for phylogenomic research

(2018) Silas Bossert et al.   Methods in Ecology and Evolution

Revision of Canadian Eurytomidae (Hymenoptera, Chalcidoidea) associated with galls induced by cynipid wasps of the genus Diplolepis Geoffroy (Hymenoptera, Cynipidae) and description of a new species

(2017) Y. Miles Zhang et al.   JOURNAL OF HYMENOPTERA RESEARCH

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Tournament ABC analysis of the western Palaearctic population history of an oak gall wasp, Synergus umbraculus

(2017) Graham N. Stone et al.   MOLECULAR ECOLOGY

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

(2016) Erfan Sayyari et al.   MOLECULAR BIOLOGY AND EVOLUTION

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

AMAS: a fast tool for alignment manipulation and computing of summary statistics

(2016) Marek L. Borowiec   PeerJ

Sequence Capture and Phylogenetic Utility of Genomic Ultraconserved Elements Obtained from Pinned Insect Specimens

(2016) Bonnie B. Blaimer et al.   PLoS One

PHYLUCE is a software package for the analysis of conserved genomic loci

(2015) Brant C. Faircloth   BIOINFORMATICS

Phylogeny, Evolution and Classification of Gall Wasps: The Plot Thickens

(2015) Fredrik Ronquist et al.   PLoS One

Phylogeny and biogeography of wild roses with specific attention to polyploids

(2014) Marie Fougère-Danezan et al.   ANNALS OF BOTANY

The wasps, bees and ants (Insecta: Vespida=Hymenoptera) from the Insect Limestone (Late Eocene) of the Isle of Wight, UK

(2014) Alexander V. Antropov et al.   Earth and Environmental Science Transactions of the Royal Society of Edinburgh

Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera

(2014) Brant C. Faircloth et al.   Molecular Ecology Resources

Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades

(2014) Nicholas J. Matzke   SYSTEMATIC BIOLOGY

Testing species limits of Eurytomidae (Hymenoptera) associated with galls induced by Diplolepis (Hymenoptera: Cynipidae) in Canada using an integrative approach

(2013) Y. Miles Zhang et al.   CANADIAN ENTOMOLOGIST

The enemy hypothesis: correlates of gall morphology with parasitoid attack rates in two closely related rose cynipid galls

(2012) Z. László et al.   BULLETIN OF ENTOMOLOGICAL RESEARCH

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

(2012) N. Rohland et al.   GENOME RESEARCH

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Mitochondrial barcodes are diagnostic of shared refugia but not species in hybridizing oak gallwasps

(2012) JAMES A. NICHOLLS et al.   MOLECULAR ECOLOGY

Gall-Inducing Wasps of the Genus Diplolepis (Hymenoptera: Cynipidae) on Shrub Roses of Turkey

(2011) Saban Güçlü et al.   PROCEEDINGS OF THE ENTOMOLOGICAL SOCIETY OF WASHINGTON

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Mitochondrial heteroplasmy and DNA barcoding in Hawaiian Hylaeus (Nesoprosopis) bees (Hymenoptera: Colletidae)

(2010) Karl N Magnacca et al.   BMC EVOLUTIONARY BIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Host Niches and Defensive Extended Phenotypes Structure Parasitoid Wasp Communities

(2009) Richard Bailey et al.   PLOS BIOLOGY

Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified

(2008) H. Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA