Environmental DNA metabarcoding of cow dung reveals taxonomic and functional diversity of invertebrate assemblages

Testing multiple substrates for terrestrial biodiversity monitoring using environmental DNA metabarcoding

(2020) Mieke Heyde et al.   Molecular Ecology Resources

Dung-associated arthropods influence foraging ecology and habitat selection in Black-necked Cranes (Grus nigricollis ) on the Qinghai-Tibet Plateau

(2019) Wei Liu et al.   Ecology and Evolution

Environmental DNA metabarcoding of wild flowers reveals diverse communities of terrestrial arthropods

(2019) Philip Francis Thomsen et al.   Ecology and Evolution

DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions

(2019) Lucie Zinger et al.   MOLECULAR ECOLOGY

Insect Declines in the Anthropocene

(2019) David L. Wagner   Annual Review of Entomology

Is the insect apocalypse upon us? How to find out

(2019) Graham A. Montgomery et al.   BIOLOGICAL CONSERVATION

Using vertebrate environmental DNA from seawater in biomonitoring of marine habitats

(2019) Eva Egelyng Sigsgaard et al.   CONSERVATION BIOLOGY

Population‐level inferences from environmental DNA—Current status and future perspectives

(2019) Eva Egelyng Sigsgaard et al.   Evolutionary Applications

Arthropod decline in grasslands and forests is associated with landscape-level drivers

(2019) Sebastian Seibold et al.   NATURE

Concentrations of environmental DNA (eDNA) reflect spawning salmon abundance at fine spatial and temporal scales

(2018) Michael D. Tillotson et al.   BIOLOGICAL CONSERVATION

The importance of ecological memory for trophic rewilding as an ecosystem restoration approach

(2018) Andreas H. Schweiger et al.   BIOLOGICAL REVIEWS

Tracing European eel in the diet of mesopelagic fishes from the Sargasso Sea using DNA from fish stomachs

(2018) Mads Reinholdt Jensen et al.   MARINE BIOLOGY

Down-sizing of dung beetle assemblages over the last 53 000 years is consistent with a dominant effect of megafauna losses

(2018) Andreas H. Schweiger et al.   OIKOS

Body size determines soil community assembly in a tropical forest

(2018) Lucie Zinger et al.   MOLECULAR ECOLOGY

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates

(2017) Tobias Guldberg Frøslev et al.   Nature Communications

DNA metabarcoding data unveils invisible pollination networks

(2017) André Pornon et al.   Scientific Reports

DNA metabarcoding for diet analysis and biodiversity: A case study using the endangered Australian sea lion (Neophoca cinerea )

(2017) Tina E. Berry et al.   Ecology and Evolution

Applying Pollen DNA Metabarcoding to the Study of Plant–Pollinator Interactions

(2017) Karen L. Bell et al.   Applications in Plant Sciences

More than 75 percent decline over 27 years in total flying insect biomass in protected areas

(2017) Caspar A. Hallmann et al.   PLoS One

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Metabarcoding and mitochondrial metagenomics of endogean arthropods to unveil the mesofauna of the soil

(2016) Paula Arribas et al.   Methods in Ecology and Evolution

Critical considerations for the application of environmental DNA methods to detect aquatic species

(2016) Caren S. Goldberg et al.   Methods in Ecology and Evolution

Estimating species richness using environmental DNA

(2016) Brett P. Olds et al.   Ecology and Evolution

Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects

(2016) Vasco Elbrecht et al.   PeerJ

Population characteristics of a large whale shark aggregation inferred from seawater environmental DNA

(2016) Eva Egelyng Sigsgaard et al.   Nature Ecology & Evolution

Environmental DNA as a ‘Snapshot’ of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan

(2016) Satoshi Yamamoto et al.   PLoS One

Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes

(2016) Philip Francis Thomsen et al.   PLoS One

Relative importance of pasture size and grazing continuity for the long-term conservation of European dung beetles

(2015) Jörn Buse et al.   BIOLOGICAL CONSERVATION

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Using eDNA to develop a national citizen science-based monitoring programme for the great crested newt (Triturus cristatus)

(2015) Jeremy Biggs et al.   BIOLOGICAL CONSERVATION

Dung beetle persistence in human-modified landscapes: Combining indicator species with anthropogenic land use and fragmentation-related effects

(2015) Bruno K.C. Filgueiras et al.   ECOLOGICAL INDICATORS

Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA

(2015) Jesse A. Port et al.   MOLECULAR ECOLOGY

Molecular prey identification in Central European piscivores

(2015) Bettina Thalinger et al.   Molecular Ecology Resources

Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies

(2015) Ida Baerholm Schnell et al.   Molecular Ecology Resources

Science for a wilder Anthropocene: Synthesis and future directions for trophic rewilding research

(2015) Jens-Christian Svenning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Collapse of the world's largest herbivores

(2015) W. J. Ripple et al.   Science Advances

From Benchtop to Desktop: Important Considerations when Designing Amplicon Sequencing Workflows

(2015) Dáithí C. Murray et al.   PLoS One

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

(2015) Vasco Elbrecht et al.   PLoS One

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

(2014) Gentile F. Ficetola et al.   Molecular Ecology Resources

High herbivore density associated with vegetation diversity in interglacial ecosystems

(2014) C. J. Sandom et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Defaunation in the Anthropocene

(2014) R. Dirzo et al.   SCIENCE

Declining Rates of Species Described per Taxonomist: Slowdown of Progress or a Side-effect of Improved Quality in Taxonomy?

(2014) George Sangster et al.   SYSTEMATIC BIOLOGY

DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet

(2013) M. De Barba et al.   Molecular Ecology Resources

PCR inhibitors - occurrence, properties and removal

(2012) C. Schrader et al.   JOURNAL OF APPLIED MICROBIOLOGY

DNA from soil mirrors plant taxonomic and growth form diversity

(2012) N. G. YOCCOZ et al.   MOLECULAR ECOLOGY

Environmental DNA

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

Monitoring endangered freshwater biodiversity using environmental DNA

(2011) PHILIP FRANCIS THOMSEN et al.   MOLECULAR ECOLOGY

Who is eating what: diet assessment using next generation sequencing

(2011) FRANCOIS POMPANON et al.   MOLECULAR ECOLOGY

Comparative Phylogeography in a Specific and Obligate Pollination Antagonism

(2011) Anahí Espíndola et al.   PLoS One

Quantitative Assessment of the Nematode Fauna Present on Geotrupes Dung Beetles Reveals Species-Rich Communities with a Heterogeneous Distribution

(2010) Andreas M. Weller et al.   JOURNAL OF PARASITOLOGY

New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: thetrnL approach

(2009) ALICE VALENTINI et al.   Molecular Ecology Resources

Co-declining mammals and dung beetles: an impending ecological cascade

(2009) E. Nichols et al.   OIKOS

Species detection using environmental DNA from water samples

(2008) G. F. Ficetola et al.   Biology Letters

DNA barcoding for ecologists

(2008) Alice Valentini et al.   TRENDS IN ECOLOGY & EVOLUTION