Run or Die in the Evolution of New MicroRNAs—Testing the Red Queen Hypothesis on De Novo New Genes

From Summary Statistics to Gene Trees: Methods for Inferring Positive Selection

(2020) Hussein A. Hejase et al.   TRENDS IN GENETICS

A Mechanism for microRNA Arm Switching Regulated by Uridylation

(2020) Haedong Kim et al.   MOLECULAR CELL

Sex peptide receptor-regulated polyandry modulates the balance of pre- and post-copulatory sexual selection in Drosophila

(2019) Juliano Morimoto et al.   Nature Communications

Gene regulatory network stabilized by pervasive weak repressions - microRNA functions revealed by the May-Wigner theory

(2019) Yuxin Chen et al.   National Science Review

Genetic Factors Influencing Sperm Competition

(2019) Alberto Civetta et al.   Frontiers in Genetics

Regulation of Large Number of Weak Targets—New Insights from Twin-microRNAs

(2018) Yixin Zhao et al.   Genome Biology and Evolution

Structural variation during dog domestication: insights from grey wolf and dhole genomes

(2018) Guo-Dong Wang et al.   National Science Review

Gene duplicates resolving sexual conflict rapidly evolved essential gametogenesis functions

(2018) Nicholas W. VanKuren et al.   Nature Ecology & Evolution

Death of new microRNA genes in Drosophila via gradual loss of fitness advantages

(2018) Guang-An Lu et al.   GENOME RESEARCH

miRBase: from microRNA sequences to function

(2018) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Parasite transmission among relatives halts Red Queen dynamics

(2017) Philip B. Greenspoon et al.   EVOLUTION

Deep experimental profiling of microRNA diversity, deployment, and evolution across theDrosophilagenus

(2017) Jaaved Mohammed et al.   GENOME RESEARCH

Redundant and incoherent regulations of multiple phenotypes suggest microRNAs’ role in stability control

(2017) Zhongqi Liufu et al.   GENOME RESEARCH

Weak Regulation of Many Targets Is Cumulatively Powerful—An Evolutionary Perspective on microRNA Functionality

(2017) Yixin Zhao et al.   MOLECULAR BIOLOGY AND EVOLUTION

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Open questions in the study of de novo genes: what, how and why

(2016) Aoife McLysaght et al.   NATURE REVIEWS GENETICS

Efficient and specific inhibition of plant microRNA function by anti-microRNA oligonucleotides (AMOs) in vitro and in vivo

(2016) Lian He et al.   PLANT CELL REPORTS

Asymmetric ecological conditions favor Red-Queen type of continued evolution over stasis

(2016) Jan Martin Nordbotten et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The “Life Histories” of Genes

(2015) Esther Betrán   JOURNAL OF MOLECULAR EVOLUTION

FlyBase: establishing a Gene Group resource forDrosophila melanogaster

(2015) Helen Attrill et al.   NUCLEIC ACIDS RESEARCH

Genes from scratch – the evolutionary fate of de novo genes

(2015) Christian Schlötterer   TRENDS IN GENETICS

Evolution of New Functions De Novo and from Preexisting Genes

(2015) Dan I. Andersson et al.   Cold Spring Harbor Perspectives in Biology

Mechanisms and Evidence of Genital Coevolution: The Roles of Natural Selection, Mate Choice, and Sexual Conflict

(2015) Patricia L.R. Brennan et al.   Cold Spring Harbor Perspectives in Biology

The Evolution of Sexually Antagonistic Phenotypes

(2015) Jennifer C. Perry et al.   Cold Spring Harbor Perspectives in Biology

Adaptive evolution of testis-specific, recently evolved, clustered miRNAs inDrosophila

(2014) Jaaved Mohammed et al.   RNA

New MicroRNAs in Drosophila—Birth, Death and Cycles of Adaptive Evolution

(2014) Yang Lyu et al.   PLoS Genetics

The life cycle of Drosophila orphan genes

(2014) Nicola Palmieri et al.   eLife

New Gene Evolution: Little Did We Know

(2013) Manyuan Long et al.   Annual Review of Genetics

New genes as drivers of phenotypic evolution

(2013) Sidi Chen et al.   NATURE REVIEWS GENETICS

Diversifying microRNA sequence and function

(2013) Stefan L. Ameres et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

An efficient strategy for TALEN-mediated genome engineering in Drosophila

(2013) Tomonori Katsuyama et al.   NUCLEIC ACIDS RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

The impact of age, biogenesis, and genomic clustering on Drosophila microRNA evolution

(2013) J. Mohammed et al.   RNA

Stepwise Evolution of Essential Centromere Function in a Drosophila Neogene

(2013) B. D. Ross et al.   SCIENCE

Birth and expression evolution of mammalian microRNA genes

(2012) J. Meunier et al.   GENOME RESEARCH

Evolution of microRNA diversity and regulation in animals

(2011) Eugene Berezikov   NATURE REVIEWS GENETICS

The evolutionary origin of orphan genes

(2011) Diethard Tautz et al.   NATURE REVIEWS GENETICS

Sex, Death, and the Red Queen

(2011) M. A. Brockhurst   SCIENCE

Running with the Red Queen: Host-Parasite Coevolution Selects for Biparental Sex

(2011) L. T. Morran et al.   SCIENCE

Red Queen: from populations to taxa and communities

(2011) Lee Hsiang Liow et al.   TRENDS IN ECOLOGY & EVOLUTION

Origins, evolution, and phenotypic impact of new genes

(2010) H. Kaessmann   GENOME RESEARCH

The evolution of gene duplications: classifying and distinguishing between models

(2010) Hideki Innan et al.   NATURE REVIEWS GENETICS

The Geographic Mosaic of Sex and the Red Queen

(2009) Kayla C. King et al.   CURRENT BIOLOGY

Evolutionary flux of canonical microRNAs and mirtrons in Drosophila

(2009) Eugene Berezikov et al.   NATURE GENETICS

Adaptive Evolution of Newly Emerged Micro-RNA Genes in Drosophila

(2008) J. Lu et al.   MOLECULAR BIOLOGY AND EVOLUTION

The birth and death of microRNA genes in Drosophila

(2008) Jian Lu et al.   NATURE GENETICS