Randomly primed, strand-switching, MinION-based sequencing for the detection and characterization of cultured RNA viruses

Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)

(2019) Anna L. McNaughton et al.   Scientific Reports

Towards high quality real-time whole genome sequencing during outbreaks using Usutu virus as example

(2019) B.B. Oude Munnink et al.   INFECTION GENETICS AND EVOLUTION

Geographic distribution and molecular analysis of porcine reproductive and respiratory syndrome viruses circulating in swine farms in the Republic of Korea between 2013 and 2016

(2018) Hyeonjeong Kang et al.   BMC Veterinary Research

Identification and genetic characterization of bovine enterovirus by combination of two next generation sequencing platforms

(2018) Maria Serena Beato et al.   JOURNAL OF VIROLOGICAL METHODS

EVIDENCE OF TWO COCIRCULATING CANINE DISTEMPER VIRUS STRAINS IN MESOCARNIVORES FROM NORTHERN COLORADO, USA

(2018) Darren J. Wostenberg et al.   JOURNAL OF WILDLIFE DISEASES

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multi-Platform Sequencing Approach Reveals a Novel Transcriptome Profile in Pseudorabies Virus

(2018) Norbert Moldován et al.   Frontiers in Microbiology

Evaluation of Oxford Nanopore’s MinION Sequencing Device for Microbial Whole Genome Sequencing Applications

(2018) Andrea D. Tyler et al.   Scientific Reports

Long-read sequencing uncovers a complex transcriptome topology in varicella zoster virus

(2018) István Prazsák et al.   BMC GENOMICS

Serotyping of foot-and-mouth disease virus using oxford nanopore sequencing

(2018) Sören Hansen et al.   JOURNAL OF VIROLOGICAL METHODS

Rapid virulence prediction and identification of Newcastle disease virus genotypes using third-generation sequencing

(2018) Salman L. Butt et al.   Virology Journal

Transcriptomic study of Herpes simplex virus type-1 using full-length sequencing techniques

(2018) Zsolt Boldogkői et al.   Scientific Data

Identification and characterization of epizootic hemorrhagic disease virus serotype 6 in cattle co-infected with bluetongue virus in Trinidad, West Indies

(2018) Tamiko Brown-Joseph et al.   VETERINARY MICROBIOLOGY

Variability and Global Distribution of Subgenotypes of Bovine Viral Diarrhea Virus

(2017) Kadir Yeşilbağ et al.   Viruses-Basel

Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing

(2016) Ravi Ranjan et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Centrifuge: rapid and sensitive classification of metagenomic sequences

(2016) Daehwan Kim et al.   GENOME RESEARCH

S1 gene-based phylogeny of infectious bronchitis virus: An attempt to harmonize virus classification

(2016) Viviana Valastro et al.   INFECTION GENETICS AND EVOLUTION

High-throughput whole genome sequencing of Porcine reproductive and respiratory syndrome virus from cell culture materials and clinical specimens using next-generation sequencing technology

(2016) Jianqiang Zhang et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Real-time, portable genome sequencing for Ebola surveillance

(2016) Joshua Quick et al.   NATURE

Epidemiology, Genetic Recombination, and Pathogenesis of Coronaviruses

(2016) Shuo Su et al.   TRENDS IN MICROBIOLOGY

Library construction for next-generation sequencing: Overviews and challenges

(2016) Steven R. Head et al.   BIOTECHNIQUES

Whole-Genome Sequencing in Outbreak Analysis

(2015) Carol A. Gilchrist et al.   CLINICAL MICROBIOLOGY REVIEWS

Improved data analysis for the MinION nanopore sequencer

(2015) Miten Jain et al.   NATURE METHODS

Quantitative Nucleic Acid Amplification Methods for Viral Infections

(2014) J. C. Gullett et al.   CLINICAL CHEMISTRY

Molecular Typing of Epizootic Hemorrhagic Disease Virus Serotypes by One-Step Multiplex RT-PCR

(2014) Feng Sun et al.   JOURNAL OF WILDLIFE DISEASES

Genetic variability and evolutionary dynamics of viruses of the family Closteroviridae

(2014) Luis Rubio   Frontiers in Microbiology

Next generation sequencing of viral RNA genomes

(2013) Denise A Marston et al.   BMC GENOMICS

Error analysis of idealized nanopore sequencing

(2013) Christopher R. O'Donnell et al.   ELECTROPHORESIS

Identification and Manipulation of the Molecular Determinants Influencing Poliovirus Recombination

(2013) Charles Runckel et al.   PLoS Pathogens

Current Best Practices for Respiratory Virus Testing

(2011) C. C. Ginocchio et al.   JOURNAL OF CLINICAL MICROBIOLOGY

An improved Real-Time Polymerase Chain Reaction for the Simultaneous Detection of All Serotypes of Epizootic Hemorrhagic Disease Virus

(2011) Alfonso Clavijo et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Tissue Tropism of Swine Influenza Viruses and Reassortants in Ex Vivo Cultures of the Human Respiratory Tract and Conjunctiva

(2011) R. W. Y. Chan et al.   JOURNAL OF VIROLOGY

High-throughput sequencing and clinical microbiology: progress, opportunities and challenges

(2010) Mark J Pallen et al.   CURRENT OPINION IN MICROBIOLOGY

A Complete Analysis of HA and NA Genes of Influenza A Viruses

(2010) Weifeng Shi et al.   PLoS One

The effects of control measures on the economic burden associated with epidemics of avian influenza in Italy

(2010) S. Sartore et al.   POULTRY SCIENCE