Long-term organic fertilization changes soil active bacterial composition and multifunctionality: RNA-based bacterial community and qPCR-based SmartChip analysis

Fertilization changes soil microbiome functioning, especially phagotrophic protists

(2020) Zhi-Bo Zhao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term effects of intensive application of manure on heavy metal pollution risk in protected-field vegetable production

(2020) Huayang Zhen et al.   ENVIRONMENTAL POLLUTION

High starter phosphorus fertilization facilitates soil phosphorus turnover by promoting microbial functional interaction in an arable soil

(2020) Hongzhe Li et al.   Journal of Environmental Sciences-China

Manure fertilization increase antibiotic resistance in soils from typical greenhouse vegetable production bases, China

(2020) Qiang Pu et al.   JOURNAL OF HAZARDOUS MATERIALS

D2O-Isotope-Labeling Approach to Probing Phosphate-Solubilizing Bacteria in Complex Soil Communities by Single-Cell Raman Spectroscopy

(2019) Hong-Zhe Li et al.   ANALYTICAL CHEMISTRY

An automated Raman-based platform for the sorting of live cells by functional properties

(2019) Kang Soo Lee et al.   Nature Microbiology

Probing the active fraction of soil microbiomes using BONCAT-FACS

(2019) Estelle Couradeau et al.   Nature Communications

The role of long-term mineral and organic fertilisation treatment in changing pathogen and symbiont community composition in soil

(2019) Liina Soonvald et al.   APPLIED SOIL ECOLOGY

Responses of resident (DNA) and active (RNA) microbial communities in fluvial biofilms under different polluted scenarios

(2019) María Argudo et al.   CHEMOSPHERE

Total and active soil fungal community profiles were significantly altered by six years of warming but not by grazing

(2019) Rongxiao Che et al.   SOIL BIOLOGY & BIOCHEMISTRY

Yield sustainability, soil organic carbon sequestration and nutrients balance under long-term combined application of manure and inorganic fertilizers in acidic paddy soil

(2019) Muhammad Qaswar et al.   SOIL & TILLAGE RESEARCH

Functional Single-Cell Approach to Probing Nitrogen-Fixing Bacteria in Soil Communities by Resonance Raman Spectroscopy with 15N2 Labeling

(2018) Li Cui et al.   ANALYTICAL CHEMISTRY

Deciphering the associations between soil microbial diversity and ecosystem multifunctionality driven by long-term fertilization management

(2018) Gongwen Luo et al.   FUNCTIONAL ECOLOGY

Quantitative stable isotope probing with H218O reveals that most bacterial taxa in soil synthesize new ribosomal RNA

(2018) Katerina Papp et al.   ISME Journal

QMEC: a tool for high-throughput quantitative assessment of microbial functional potential in C, N, P, and S biogeochemical cycling

(2018) Bangxiao Zheng et al.   Science China-Life Sciences

Antibiotic Effects on Microbial Communities Responsible for Denitrification and N2O Production in Grassland Soils

(2018) Miguel Semedo et al.   Frontiers in Microbiology

Impacts of chlorothalonil on denitrification and N2O emission in riparian sediments: Microbial metabolism mechanism

(2018) Xiaoxuan Su et al.   WATER RESEARCH

Distinct rhizosphere effect on active and total bacterial communities in paddy soils

(2018) Hu Li et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Effects of hexaconazole application on soil microbes community and nitrogen transformations in paddy soils

(2017) Chao Ju et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Diversity and Composition of Sulfate-Reducing Microbial Communities Based on Genomic DNA and RNA Transcription in Production Water of High Temperature and Corrosive Oil Reservoir

(2017) Xiao-Xiao Li et al.   Frontiers in Microbiology

Bacillus asahii comes to the fore in organic manure fertilized alkaline soils

(2015) Youzhi Feng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Differential responses of total and active soil microbial communities to long-term experimental N deposition

(2015) Zachary B. Freedman et al.   SOIL BIOLOGY & BIOCHEMISTRY

The links between ecosystem multifunctionality and above- and belowground biodiversity are mediated by climate

(2015) Xin Jing et al.   Nature Communications

Bacterial and archaeal communities in long-term contaminated surface and subsurface soil evaluated through coextracted RNA and DNA

(2014) Anu Mikkonen et al.   FEMS MICROBIOLOGY ECOLOGY

Long-term nitrogen fertilization of paddy soil shifts iron-reducing microbial community revealed by RNA-13C-acetate probing coupled with pyrosequencing

(2014) Long-Jun Ding et al.   ISME Journal

Impacts of compost application on the formation and functioning of arbuscular mycorrhizas

(2014) Timothy R. Cavagnaro   SOIL BIOLOGY & BIOCHEMISTRY

Isolation, screening and identification of antagonistic downy mildew endophytic bacteria from cucumber

(2013) Zhan-Bin Sun et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Active microorganisms in soil: Critical review of estimation criteria and approaches

(2013) Evgenia Blagodatskaya et al.   SOIL BIOLOGY & BIOCHEMISTRY

In-feed antibiotic effects on the swine intestinal microbiome

(2012) T. Looft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA determinations during growth of soil microbial biomasses

(2012) Traute-Heidi Anderson et al.   SOIL BIOLOGY & BIOCHEMISTRY

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea communities of an alkaline sandy loam

(2008) Ju-pei Shen et al.   ENVIRONMENTAL MICROBIOLOGY

Long-term fertilization regimes affect bacterial community structure and diversity of an agricultural soil in northern China

(2008) Yuan Ge et al.   JOURNAL OF SOILS AND SEDIMENTS