Antibiotic Effects on Microbial Communities Responsible for Denitrification and N2O Production in Grassland Soils

Genomics and Ecology of Novel N 2 O-Reducing Microorganisms

(2018) Sara Hallin et al.   TRENDS IN MICROBIOLOGY

Dynamic interplay between microbial denitrification and antibiotic resistance under enhanced anoxic denitrification condition in soil

(2017) Mingming Sun et al.   ENVIRONMENTAL POLLUTION

Fungal denitrification contributes significantly to N2O production in a highly acidic tea soil

(2017) Ying Huang et al.   JOURNAL OF SOILS AND SEDIMENTS

Denitrification potential of the eastern oyster microbiome using a 16S rRNA gene based metabolic inference approach

(2017) Ann Arfken et al.   PLoS One

Change in microbial community in landfill refuse contaminated with antibiotics facilitates denitrification more than the increase in ARG over long-term

(2017) Dong Wu et al.   Scientific Reports

The nitrogen cycle

(2016) Lisa Y. Stein et al.   CURRENT BIOLOGY

Can pH amendments in grazed pastures help reduce N2O emissions from denitrification? – The effects of liming and urine addition on the completion of denitrification in fluvial and volcanic soils

(2016) Andrew M.S. McMillan et al.   SOIL BIOLOGY & BIOCHEMISTRY

An Analysis of the Effects of Vancomycin and/or Vancomycin-Resistant Citrobacter freundii Exposure on the Microbial Community Structure in Soil

(2016) Mariusz Cycoń et al.   Frontiers in Microbiology

Phylogenetic and functional potential links pH and N2O emissions in pasture soils

(2016) Md Sainur Samad et al.   Scientific Reports

Moving Beyond Global Warming Potentials to Quantify the Climatic Role of Ecosystems

(2015) Scott C. Neubauer et al.   ECOSYSTEMS

Soil Organic Carbon Beneath Croplands and Re-established Grasslands in the North Dakota Prairie Pothole Region

(2015) Rebecca L. Phillips et al.   ENVIRONMENTAL MANAGEMENT

Phylogenetic, taxonomic and functional diversity of fungal denitrifiers and associated N2O production efficacy

(2015) Nape Mothapo et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fungal and bacterial N2O production regulated by soil amendments of simple and complex substrates

(2015) Huaihai Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

The effect of ultralow-dose antibiotics exposure on soil nitrate and N2O flux

(2015) Stephanie L. DeVries et al.   Scientific Reports

N2O production, a widespread trait in fungi

(2015) Koki Maeda et al.   Scientific Reports

The diversity of the N2O reducers matters for the N2O:N2 denitrification end-product ratio across an annual and a perennial cropping system

(2015) Luiz A. Domeignoz-Horta et al.   Frontiers in Microbiology

Microbial Communities Can Be Described by Metabolic Structure: A General Framework and Application to a Seasonally Variable, Depth-Stratified Microbial Community from the Coastal West Antarctic Peninsula

(2015) Jeff S. Bowman et al.   PLoS One

Effects of Sulfamethazine on Denitrification and the Associated N2O Release in Estuarine and Coastal Sediments

(2014) Lijun Hou et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Intergenomic Comparisons Highlight Modularity of the Denitrification Pathway and Underpin the Importance of Community Structure for N2O Emissions

(2014) Daniel R. H. Graf et al.   PLoS One

Soil biodiversity and soil community composition determine ecosystem multifunctionality

(2014) C. Wagg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inhibitory Effect of Veterinary Antibiotics on Denitrification in Groundwater: A Microcosm Approach

(2014) Mahtab Ahmad et al.   TheScientificWorldJOURNAL

Recently identified microbial guild mediates soil N2O sink capacity

(2014) Christopher M. Jones et al.   Nature Climate Change

Potential of Biological Processes to Eliminate Antibiotics in Livestock Manure: An Overview

(2014) Daniel Massé et al.   Animals

Chronic exposure of river sediments to environmentally relevant levels of tetracycline affects bacterial communities but not denitrification rates

(2013) Céline Roose-Amsaleg et al.   ECOTOXICOLOGY

Tetracycline antibiotics in the environment: a review

(2013) R. Daghrir et al.   Environmental Chemistry Letters

An initial screening of antibiotic effects on microbial respiration in wetland soils

(2013) Jeremy L. Conkle et al.   JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART A-TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Diverse and abundant antibiotic resistance genes in Chinese swine farms

(2013) Yong-Guan Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

N2O emission from cropland field soil through fungal denitrification after surface applications of organic fertilizer

(2013) Wei Wei et al.   SOIL BIOLOGY & BIOCHEMISTRY

Co-Occurring Anammox, Denitrification, and Codenitrification in Agricultural Soils

(2012) Andrew Long et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink

(2012) Christopher M Jones et al.   ISME Journal

Fast, accurate error-correction of amplicon pyrosequences using Acacia

(2012) Lauren Bragg et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Biological sources and sinks of nitrous oxide and strategies to mitigate emissions

(2012) A. J. Thomson et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Fungal denitrification and nitric oxide reductase cytochrome P450nor

(2012) H. Shoun et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils

(2012) R. A. Sanford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Effects of the Antimicrobial Sulfamethoxazole on Groundwater Bacterial Enrichment

(2011) Jennifer C. Underwood et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Biogenic emissions of CO2 and N2O at multiple depths increase exponentially during a simulated soil thaw for a northern prairie Mollisol

(2011) Rebecca L. Phillips et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrous Oxide Emissions from Ephemeral Wetland Soils are Correlated with Microbial Community Composition

(2011) Wai K. Ma et al.   Frontiers in Microbiology

Effect of antibiotics in the environment on microbial populations

(2010) Chang Ding et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

Effect of sulfonamide antibiotics on microbial diversity and activity in a Californian Mollic Haploxeralf

(2010) Iris R. Gutiérrez et al.   JOURNAL OF SOILS AND SEDIMENTS

Effect of Sulfadiazine on Abundance and Diversity of Denitrifying Bacteria by Determining nirK and nirS Genes in Two Arable Soils

(2010) Kristina Kleineidam et al.   MICROBIAL ECOLOGY

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Nitrous Oxide (N2O): The Dominant Ozone-Depleting Substance Emitted in the 21st Century

(2009) A. R. Ravishankara et al.   SCIENCE

Effects of sulfamethoxazole on soil microbial communities after adding substrate

(2009) Louise Aldén Demoling et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of the antibiotic ciprofloxacin on the bacterial community structure and degradation of pyrene in marine sediment

(2008) Johan Näslund et al.   AQUATIC TOXICOLOGY

Impact of the antibiotic sulfadiazine and pig manure on the microbial community structure in agricultural soils

(2008) Ute Hammesfahr et al.   SOIL BIOLOGY & BIOCHEMISTRY

Alterations in soil microbial activity and N-transformation processes due to sulfadiazine loads in pig-manure

(2007) Anja Kotzerke et al.   ENVIRONMENTAL POLLUTION