Exposure to benzo[a]pyrene triggers distinct patterns of microRNA transcriptional profiles in aquatic firefly Aquatica wuhana (Coleoptera: Lampyridae)

Comparative transcriptomic analysis of fireflies (Coleoptera: Lampyridae) to explore the molecular adaptations to fresh water

(2020) Qi‐Lin Zhang et al.   MOLECULAR ECOLOGY

Comparative transcriptomic analysis provides insights into the response to the benzo(a)pyrene stress in aquatic firefly (Luciola leii)

(2019) Qi-Lin Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Transcriptional responses of Acropora hyacinthus embryo under the benzo( a )pyrene stress by deep sequencing

(2018) Rong Xiao et al.   CHEMOSPHERE

Toxicological responses on cytochrome P450 and metabolic transferases in liver of goldfish ( Carassius auratus ) exposed to lead and paraquat

(2018) Xiaoming Xu et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Exposure to bisphenol S alters the expression of microRNA in male zebrafish

(2018) Jiyun Lee et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Exposure to triclosan changes the expression of microRNA in male juvenile zebrafish (Danio rerio)

(2018) Fan Wang et al.   CHEMOSPHERE

Regulatory mechanisms of miR-96 and miR-184 abnormal expressions on otic vesicle development of zebrafish following exposure to β-diketone antibiotics

(2018) Jieyi Li et al.   CHEMOSPHERE

Transcriptomic analysis reveals dose-dependent modes of action of benzo(a)pyrene in polar cod (Boreogadus saida)

(2018) You Song et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Genome-wide transcriptional response of microRNAs to the benzo(a)pyrene stress in amphioxus Branchiostoma belcheri

(2018) Qi-Lin Zhang et al.   CHEMOSPHERE

Gene sequence variations and expression patterns of mitochondrial genes are associated with the adaptive evolution of two Gynaephora species (Lepidoptera: Lymantriinae) living in different high-elevation environments

(2017) Qi-Lin Zhang et al.   GENE

Exposure to lethal levels of benzo[ a ]pyrene or cadmium trigger distinct protein expression patterns in earthworms ( Eisenia fetida )

(2017) Lihao Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Transcriptome-wide analysis of immune-responsive microRNAs against poly (I:C) challenge in Branchiostoma belcheri by deep sequencing and bioinformatics

(2017) Qi-Lin Zhang et al.   Oncotarget

Long-read sequence assembly of the firefly Pyrocoelia pectoralis genome

(2017) Xinhua Fu et al.   GigaScience

Transcriptomic responses of Perna viridis embryo to Benzo(a)pyrene exposure elucidated by RNA sequencing

(2016) Xiu Jiang et al.   CHEMOSPHERE

Toxicological effects of benzo(a)pyrene, DDT and their mixture on the green mussel Perna viridis revealed by proteomic and metabolomic approaches

(2016) Qinqin Song et al.   CHEMOSPHERE

In vitro study of the effect of metabolism enzymes on benzo(a)pyrene-induced DNA damage in the scallop Chlamys farreri

(2016) Yuefeng Cai et al.   ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY

Analysis of digital gene expression profiling in hemocytes of white shrimp Litopenaeus vannamei under nitrite stress

(2016) Hui Guo et al.   FISH & SHELLFISH IMMUNOLOGY

Uncovering microRNA-mediated response to SO2 stress in Arabidopsis thaliana by deep sequencing

(2016) Lihong Li et al.   JOURNAL OF HAZARDOUS MATERIALS

De Novo assembly and annotation of the freshwater crayfish Astacus astacus transcriptome

(2016) Kathrin Theissinger et al.   Marine Genomics

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Benzo-α-pyrene induced oxidative stress in Caenorhabditis elegans and the potential involvements of microRNA

(2015) Hongmei Wu et al.   CHEMOSPHERE

Effects of benzo[a]pyrene on growth, the antioxidant system, and DNA damage in earthworms (Eisenia fetida) in 2 different soil types under laboratory conditions

(2015) Xiaochen Duan et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Identification of microRNAs by small RNA deep sequencing for synthetic microRNA mimics to control Spodoptera exigua

(2015) Yu Liang Zhang et al.   GENE

Phenobarbital Induction and Chemical Synergism Demonstrate the Role of UDP-Glucuronosyltransferases in Detoxification of Naphthalophos by Haemonchus contortus Larvae

(2014) Andrew C. Kotze et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The role of Toll-like Receptors in innate immunity and infectious diseases of teleost

(2014) Mahmoud Tanekhy   AQUACULTURE RESEARCH

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Comparison of RNA Isolation Methods From Insect Larvae

(2014) J. A. Ridgeway et al.   JOURNAL OF INSECT SCIENCE

miR-190 is upregulated in Epstein–Barr Virus type I latency and modulates cellular mRNAs involved in cell survival and viral reactivation

(2014) Elizabeth M. Cramer et al.   VIROLOGY

Quercetin induces cytochrome-c release and ROS accumulation to promote apoptosis and arrest the cell cycle in G2/M, in cervical carcinoma: signal cascade and drug-DNA interaction

(2013) K. Bishayee et al.   CELL PROLIFERATION

Expression Pattern of Entire Cytochrome P450 Genes and Response of Defensomes in the Benzo[a]pyrene-Exposed Monogonont Rotifer Brachionus koreanus

(2013) Ryeo-Ok Kim et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Benzo[a]pyrene decreases global and gene specific DNA methylation during zebrafish development

(2013) Xiefan Fang et al.   ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY

Trascriptome analysis of the Pacific white shrimp Litopenaeus vannamei exposed to nitrite by RNA-seq

(2013) Hui Guo et al.   FISH & SHELLFISH IMMUNOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

DrosophilamiR-277 controls branched-chain amino acid catabolism and affects lifespan

(2013) Stephanie Maria Esslinger et al.   RNA Biology

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Embryonic exposure to benzo(a)pyrene influences neural development and function in rockfish (Sebastiscus marmoratus)

(2012) Chengyong He et al.   NEUROTOXICOLOGY

MicroRNA miR-308 regulates dMyc through a negative feedback loop in Drosophila

(2012) K. Daneshvar et al.   Biology Open

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Zebrafish (Danio rerio) embryos as a model for testing proteratogens

(2011) Stefan Weigt et al.   TOXICOLOGY

Identification of the couple GSK3α/c-Myc as a new regulator of hexokinase II in benzo[a]pyrene-induced apoptosis

(2011) Béatrice Dendelé et al.   TOXICOLOGY IN VITRO

Linking the mitochondrial genotype to the organismal phenotype

(2010) J. W. O. BALLARD et al.   MOLECULAR ECOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

miR-1 Overexpression Enhances Ca 2+ Release and Promotes Cardiac Arrhythmogenesis by Targeting PP2A Regulatory Subunit B56α and Causing CaMKII-Dependent Hyperphosphorylation of RyR2

(2009) Dmitry Terentyev et al.   CIRCULATION RESEARCH

When Signaling Pathways Collide: Positive and Negative Regulation of Toll-like Receptor Signal Transduction

(2008) Luke A.J. O'Neill   IMMUNITY

Antiflagellin antibodies recognize the autoantigens Toll-Like Receptor 5 and Pals 1-associated tight junction protein and induce monocytes activation and increased intestinal permeability in Crohn’s disease

(2008) C. Lunardi et al.   JOURNAL OF INTERNAL MEDICINE

Discovering microRNAs from deep sequencing data using miRDeep

(2008) Marc R Friedländer et al.   NATURE BIOTECHNOLOGY

The Vienna RNA Websuite

(2008) A. R. Gruber et al.   NUCLEIC ACIDS RESEARCH

Flash Signal Evolution, Mate Choice, and Predation in Fireflies

(2007) Sara M. Lewis et al.   Annual Review of Entomology