Xylem transcription profiles indicate potential metabolic responses for economically relevant characteristics of Eucalyptus species

AP2/ERF family transcription factors in plant abiotic stress responses

(2011) Junya Mizoi et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq

(2011) Eshchar Mizrachi et al.   BMC GENOMICS

RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus

(2011) Emilie Villar et al.   BMC GENOMICS

Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

(2011) Jorge AP Paiva et al.   BMC GENOMICS

Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

(2011) S Samuel Yang et al.   BMC GENOMICS

WRKY gene family evolution in Arabidopsis thaliana

(2011) Qishan Wang et al.   GENETICA

Recent advances in the transcriptional regulation of the flavonoid biosynthetic pathway

(2011) Imène Hichri et al.   JOURNAL OF EXPERIMENTAL BOTANY

Reference Genes for the Normalization of Gene Expression in Eucalyptus Species

(2011) L. A. de Oliveira et al.   PLANT AND CELL PHYSIOLOGY

Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics

(2011) Xiaohan Yang et al.   PLANT SCIENCE

A comparison of RNA-Seq and high-density exon array for detecting differential gene expression between closely related species

(2010) Song Liu et al.   NUCLEIC ACIDS RESEARCH

Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing

(2010) Bin Wang et al.   NUCLEIC ACIDS RESEARCH

ArabidopsisVASCULAR-RELATED NAC-DOMAIN6 Directly Regulates the Genes That Govern Programmed Cell Death and Secondary Wall Formation during Xylem Differentiation

(2010) Kyoko Ohashi-Ito et al.   PLANT CELL

Update on Mechanisms of Plant Cell Wall Biosynthesis: How Plants Make Cellulose and Other (1->4)- -D-Glycans

(2010) N. C. Carpita   PLANT PHYSIOLOGY

Exploring multiple drug and herbicide resistance in plants—Spotlight on transporter proteins

(2010) Sarah S. Conte et al.   PLANT SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Dynamic changes in transcripts during regeneration of the secondary vascular system in Populus tomentosa Carr. revealed by cDNA microarrays

(2009) Minjie Wang et al.   BMC GENOMICS

SIZ1 Controls Cell Growth and Plant Development in Arabidopsis Through Salicylic Acid

(2009) K. Miura et al.   PLANT AND CELL PHYSIOLOGY

A large genome center's improvements to the Illumina sequencing system

(2008) Michael A Quail et al.   NATURE METHODS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Eucalyptusapplied genomics: from gene sequences to breeding tools

(2008) Dario Grattapaglia et al.   NEW PHYTOLOGIST

Temperature and nitrogen effects on regulators and products of the flavonoid pathway: experimental and kinetic model studies

(2008) KRISTINE M. OLSEN et al.   PLANT CELL AND ENVIRONMENT

Structure and function of enzymes involved in the biosynthesis of phenylpropanoids

(2008) J.-L. Ferrer et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY