An APEX2 proximity ligation method for mapping interactions with the nuclear lamina
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Title
An APEX2 proximity ligation method for mapping interactions with the nuclear lamina
Authors
Keywords
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Journal
JOURNAL OF CELL BIOLOGY
Volume 220, Issue 1, Pages -
Publisher
Rockefeller University Press
Online
2020-12-12
DOI
10.1083/jcb.202002129
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Note: Only part of the references are listed.- Cell‐type‐specific role of lamin‐B1 in thymus development and its inflammation‐driven reduction in thymus aging
- (2019) Sibiao Yue et al. AGING CELL
- The ATP-powered gymnastics of TRiC/CCT: an asymmetric protein folding machine with a symmetric origin story
- (2019) Daniel Gestaut et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Lamins Organize the Global Three-Dimensional Genome from the Nuclear Periphery
- (2018) Xiaobin Zheng et al. MOLECULAR CELL
- A General Framework for Interrogation of mRNA Stability Programs Identifies RNA-Binding Proteins that Govern Cancer Transcriptomes
- (2018) Gabrielle Perron et al. Cell Reports
- Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler
- (2018) Yu Chen et al. JOURNAL OF CELL BIOLOGY
- PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools
- (2018) Huaiyu Mi et al. NUCLEIC ACIDS RESEARCH
- Phosphorylation of poly(rC) binding protein 1 (PCBP1) contributes to stabilization of mu opioid receptor (MOR) mRNA via interaction with AU-rich element RNA-binding protein 1 (AUF1) and poly A binding protein (PABP)
- (2017) Cheol Kyu Hwang et al. GENE
- Biotinylation by antibody recognition—a method for proximity labeling
- (2017) Daniel Z Bar et al. NATURE METHODS
- A subcellular map of the human proteome
- (2017) Peter J. Thul et al. SCIENCE
- Comprehensive analysis of nucleocytoplasmic dynamics of mRNA in Drosophila cells
- (2017) Tao Chen et al. PLoS Genetics
- Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking
- (2017) Pornchai Kaewsapsak et al. eLife
- Proximity-dependent labeling methods for proteomic profiling in living cells
- (2017) Chiao-Lin Chen et al. Wiley Interdisciplinary Reviews-Developmental Biology
- Lamin Dysfunction Mediates Neurodegeneration in Tauopathies
- (2016) Bess Frost et al. CURRENT BIOLOGY
- Lamin in inflammation and aging
- (2016) Joseph R Tran et al. CURRENT OPINION IN CELL BIOLOGY
- Spatially resolved proteomic mapping in living cells with the engineered peroxidase APEX2
- (2016) Victoria Hung et al. Nature Protocols
- Evolution and Biological Roles of Alternative 3′UTRs
- (2016) Christine Mayr TRENDS IN CELL BIOLOGY
- Extracting Accurate Precursor Information for Tandem Mass Spectra by RawConverter
- (2015) Lin He et al. ANALYTICAL CHEMISTRY
- Mammalian autophagy degrades nuclear constituents in response to tumorigenic stress
- (2015) Zhixun Dou et al. Autophagy
- Detained introns are a novel, widespread class of post-transcriptionally spliced introns
- (2015) Paul L. Boutz et al. GENES & DEVELOPMENT
- Disruption of the lamin A and matrin-3 interaction by myopathicLMNAmutations
- (2015) Frederic F. Depreux et al. HUMAN MOLECULAR GENETICS
- ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity
- (2015) T. Xu et al. Journal of Proteomics
- Lamins position the nuclear pores and centrosomes by modulating dynein
- (2015) Yuxuan Guo et al. MOLECULAR BIOLOGY OF THE CELL
- Identification of lamin B–regulated chromatin regions based on chromatin landscapes
- (2015) Xiaobin Zheng et al. MOLECULAR BIOLOGY OF THE CELL
- Chaperonin' telomerase
- (2015) Katharine H. Wrighton NATURE REVIEWS MOLECULAR CELL BIOLOGY
- mRNA 3′-UTR shortening is a molecular signature of mTORC1 activation
- (2015) Jae-Woong Chang et al. Nature Communications
- Lamin-B in systemic inflammation, tissue homeostasis, and aging
- (2015) Haiyang Chen et al. Nucleus
- Lamin-B in systemic inflammation, tissue homeostasis, and aging
- (2015) Haiyang Chen et al. Nucleus
- MacroH2A1 associates with nuclear lamina and maintains chromatin architecture in mouse liver cells
- (2015) Yuhua Fu et al. Scientific Reports
- Age-Associated Loss of Lamin-B Leads to Systemic Inflammation and Gut Hyperplasia
- (2014) Haiyang Chen et al. CELL
- Proteostatic Control of Telomerase Function through TRiC-Mediated Folding of TCAB1
- (2014) Adam Freund et al. CELL
- Breaching the nuclear envelope in development and disease
- (2014) Emily Hatch et al. JOURNAL OF CELL BIOLOGY
- The Quantitative Nuclear Matrix Proteome as a Biochemical Snapshot of Nuclear Organization
- (2014) Rudolf Engelke et al. JOURNAL OF PROTEOME RESEARCH
- Systematic identification of pathological lamin A interactors
- (2014) Travis A. Dittmer et al. MOLECULAR BIOLOGY OF THE CELL
- Concentration-dependent lamin assembly and its roles in the localization of other nuclear proteins
- (2014) Yuxuan Guo et al. MOLECULAR BIOLOGY OF THE CELL
- Proteomic Mapping of the Human Mitochondrial Intermembrane Space in Live Cells via Ratiometric APEX Tagging
- (2014) Victoria Hung et al. MOLECULAR CELL
- Directed evolution of APEX2 for electron microscopy and proximity labeling
- (2014) Stephanie S Lam et al. NATURE METHODS
- Identification of differential protein interactors of lamin A and progerin
- (2014) Nard Kubben et al. Nucleus
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- When Lamins Go Bad: Nuclear Structure and Disease
- (2013) Katherine H. Schreiber et al. CELL
- Lamins are rapamycin targets that impact human longevity: a study in centenarians
- (2013) G. Lattanzi et al. JOURNAL OF CELL SCIENCE
- Proteomic Mapping of Mitochondria in Living Cells via Spatially Restricted Enzymatic Tagging
- (2013) H.-W. Rhee et al. SCIENCE
- Nuclear Lamin-A Scales with Tissue Stiffness and Enhances Matrix-Directed Differentiation
- (2013) J. Swift et al. SCIENCE
- Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence
- (2012) W. Meuleman et al. GENOME RESEARCH
- A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells
- (2012) Kyle J. Roux et al. JOURNAL OF CELL BIOLOGY
- Lamin B1 loss is a senescence-associated biomarker
- (2012) Adam Freund et al. MOLECULAR BIOLOGY OF THE CELL
- Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy
- (2012) Jeffrey D Martell et al. NATURE BIOTECHNOLOGY
- The nuclear lamins: flexibility in function
- (2012) Brian Burke et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The role of nuclear lamin B1 in cell proliferation and senescence
- (2011) T. Shimi et al. GENES & DEVELOPMENT
- Mouse B-Type Lamins Are Required for Proper Organogenesis But Not by Embryonic Stem Cells
- (2011) Y. Kim et al. SCIENCE
- Abnormal development of the cerebral cortex and cerebellum in the setting of lamin B2 deficiency
- (2010) C. Coffinier et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Poly(C)-binding proteins as transcriptional regulators of gene expression
- (2009) Hack Sun Choi et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells
- (2009) Christine Mayr et al. CELL
- Nuclear lamins: major factors in the structural organization and function of the nucleus and chromatin
- (2008) T. Dechat et al. GENES & DEVELOPMENT
- Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
- (2008) Lars Guelen et al. NATURE
- Control of c-myc mRNA stability by IGF2BP1-associated cytoplasmic RNPs
- (2008) D. Weidensdorfer et al. RNA
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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