Specific pools of endogenous peptides are present in gametophore, protonema, and protoplast cells of the moss Physcomitrella patens

Plant peptides in defense and signaling

(2014) Nelson Marmiroli et al.   PEPTIDES

Quantitative Peptidomics Study Reveals That a Wound-Induced Peptide from PR-1 Regulates Immune Signaling in Tomato

(2014) Y.-L. Chen et al.   PLANT CELL

The chromatin landscape of the mossPhyscomitrella patensand its dynamics during development and drought stress

(2014) Thomas Widiez et al.   PLANT JOURNAL

Proteins with High Turnover Rate in Barley Leaves Estimated by Proteome Analysis Combined with in Planta Isotope Labeling

(2014) Clark J. Nelson et al.   PLANT PHYSIOLOGY

Temporal Dynamics of Growth and Photosynthesis Suppression in Response to Jasmonate Signaling

(2014) E. Attaran et al.   PLANT PHYSIOLOGY

The role of ubiquitin and the 26S proteasome in plant abiotic stress signaling

(2014) Sophia L. Stone   Frontiers in Plant Science

Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions

(2013) Andreas D Zimmer et al.   BMC GENOMICS

The protein quality control system manages plant defence compound synthesis

(2013) Jacob Pollier et al.   NATURE

Release of Proteins from Intact Chloroplasts Induced by Reactive Oxygen Species during Biotic and Abiotic Stress

(2013) Kwang-Chul Kwon et al.   PLoS One

Small open reading frames associated with morphogenesis are hidden in plant genomes

(2013) K. Hanada et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of Group 3 LEA protein model peptides on desiccation-induced protein aggregation

(2012) Takao Furuki et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Physcomitrella patens activates reinforcement of the cell wall, programmed cell death and accumulation of evolutionary conserved defence signals, such as salicylic acid and 12-oxo-phytodienoic acid, but not jasmonic acid, upon Botrytis cinerea infection

(2012) INÉS PONCE DE LEÓN et al.   MOLECULAR PLANT PATHOLOGY

Peptidomic discovery of short open reading frame–encoded peptides in human cells

(2012) Sarah A Slavoff et al.   Nature Chemical Biology

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Small Signaling Peptides in Arabidopsis Development: How Cells Communicate Over a Short Distance

(2012) E. Murphy et al.   PLANT CELL

Ubiquitination during Plant Immune Signaling

(2012) D. Marino et al.   PLANT PHYSIOLOGY

How Plants Sense Wounds: Damaged-Self Recognition Is Based on Plant-Derived Elicitors and Induces Octadecanoid Signaling

(2012) Martin Heil et al.   PLoS One

Transcriptome of Protoplasts Reprogrammed into Stem Cells in Physcomitrella patens

(2012) Lihong Xiao et al.   PLoS One

Digital Gene Expression Profiling by 5′-End Sequencing of cDNAs during Reprogramming in the Moss Physcomitrella patens

(2012) Tomoaki Nishiyama et al.   PLoS One

Probing Protein Sequences as Sources for Encrypted Antimicrobial Peptides

(2012) Guilherme D. Brand et al.   PLoS One

High-Throughput Droplet Digital PCR System for Absolute Quantitation of DNA Copy Number

(2011) Benjamin J. Hindson et al.   ANALYTICAL CHEMISTRY

AMPA: an automated web server for prediction of protein antimicrobial regions

(2011) Marc Torrent et al.   BIOINFORMATICS

Genome-wide transcriptome analysis of gametophyte development in Physcomitrella patens

(2011) Lihong Xiao et al.   BMC PLANT BIOLOGY

A plant alternative to animal caspases: subtilisin-like proteases

(2011) A B Vartapetian et al.   CELL DEATH AND DIFFERENTIATION

Programmed cell death in the plant immune system

(2011) N S Coll et al.   CELL DEATH AND DIFFERENTIATION

Endogenous peptide elicitors in higher plants

(2011) Yube Yamaguchi et al.   CURRENT OPINION IN PLANT BIOLOGY

Characterization of a transport activity for long-chain peptides in barley mesophyll vacuoles

(2011) M. Schnell Ramos et al.   JOURNAL OF EXPERIMENTAL BOTANY

Proteome analysis of Physcomitrella patens exposed to progressive dehydration and rehydration

(2011) Suxia Cui et al.   JOURNAL OF EXPERIMENTAL BOTANY

Classes of programmed cell death in plants, compared to those in animals

(2011) W. G. van Doorn   JOURNAL OF EXPERIMENTAL BOTANY

Proteasome Activator 200: The HEAT is on…

(2011) Anca F. Savulescu et al.   MOLECULAR & CELLULAR PROTEOMICS

Metabolite profiling of the moss Physcomitrella patens reveals evolutionary conservation of osmoprotective substances

(2011) Anika Erxleben et al.   PLANT CELL REPORTS

GmPep914, an Eight-Amino Acid Peptide Isolated from Soybean Leaves, Activates Defense-Related Genes

(2011) Y. Yamaguchi et al.   PLANT PHYSIOLOGY

Jasmonate Controls Polypeptide Patterning in Undamaged Tissue in Wounded Arabidopsis Leaves

(2011) A. Gfeller et al.   PLANT PHYSIOLOGY

Leaf senescence and abiotic stresses share reactive oxygen species-mediated chloroplast degradation

(2011) Renu Khanna-Chopra   PROTOPLASMA

Hundreds of putatively functional small open reading frames in Drosophila

(2011) Emmanuel Ladoukakis et al.   GENOME BIOLOGY

A Peptidomics Strategy for Discovering Endogenous Bioactive Peptides

(2010) Kazuki Sasaki et al.   JOURNAL OF PROTEOME RESEARCH

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The moss Physcomitrella patens contains cyclopentenones but no jasmonates: mutations in allene oxide cyclase lead to reduced fertility and altered sporophyte morphology

(2010) Michael Stumpe et al.   NEW PHYTOLOGIST

Structure–activity studies of GmSubPep, a soybean peptide defense signal derived from an extracellular protease

(2010) Gregory Pearce et al.   PEPTIDES

Simultaneous isolation of pure and intact chloroplasts and mitochondria from moss as the basis for sub-cellular proteomics

(2010) Erika G. E. Lang et al.   PLANT CELL REPORTS

A subtilisin-like protein from soybean contains an embedded, cryptic signal that activates defense-related genes

(2010) G. Pearce et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Catalytic and chaperone-like functions in an intrinsically disordered protein associated with desiccation tolerance

(2010) S. Chakrabortee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small Peptides Switch the Transcriptional Activity of Shavenbaby During Drosophila Embryogenesis

(2010) T. Kondo et al.   SCIENCE

WRKY transcription factors

(2010) Paul J. Rushton et al.   TRENDS IN PLANT SCIENCE

Proteome analysis of the moss Physcomitrella patens (Hedw.) B.S.G.

(2009) A. Yu. Skripnikov et al.   BIOCHEMISTRY-MOSCOW

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Evidence for the Existence in Arabidopsis thaliana of the Proteasome Proteolytic Pathway

(2009) Cécile Polge et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Receptor-like kinases shape the plant

(2009) Ive De Smet et al.   NATURE CELL BIOLOGY

Microarray analysis of the moss Physcomitrella patens reveals evolutionarily conserved transcriptional regulation of salt stress and abscisic acid signalling

(2009) Sandra Richardt et al.   PLANT MOLECULAR BIOLOGY

Proteomic analysis of the cold stress response in the moss,Physcomitrella patens

(2009) Xiaoqin Wang et al.   PROTEOMICS

Plant peptides in signalling: looking for new partners

(2009) Melinka A. Butenko et al.   TRENDS IN PLANT SCIENCE

Plant Proteases: From Phenotypes to Molecular Mechanisms

(2008) Renier A. L. van der Hoorn   Annual Review of Plant Biology

Heat shock proteins: essential proteins for apoptosis regulation

(2008) D. Lanneau et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Cysteine proteinases regulate chloroplast protein content and composition in tobacco leaves: a model for dynamic interactions with ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) vesicular bodies

(2008) Anneke Prins et al.   JOURNAL OF EXPERIMENTAL BOTANY

β‐Actin‐derived peptides isolated from acidic extract of rat spleen suppress tumor cell growth

(2008) Elena Y. Blishchenko et al.   JOURNAL OF PEPTIDE SCIENCE

Plant peptides and peptidomics

(2008) Naser Farrokhi et al.   PLANT BIOTECHNOLOGY JOURNAL

Water Transport by Aquaporins in the Extant Plant Physcomitrella patens

(2008) D. Lienard et al.   PLANT PHYSIOLOGY

Autophagy Plays a Role in Chloroplast Degradation during Senescence in Individually Darkened Leaves

(2008) S. Wada et al.   PLANT PHYSIOLOGY

The Enigmatic LEA Proteins and Other Hydrophilins

(2008) M. Battaglia et al.   PLANT PHYSIOLOGY

Proteomic analysis of the response to high-salinity stress in Physcomitrella patens

(2008) Xiaoqin Wang et al.   PLANTA