Digital Gene Expression Profiling by 5′-End Sequencing of cDNAs during Reprogramming in the Moss Physcomitrella patens

PhyscomitrellaCyclin-Dependent Kinase A Links Cell Cycle Reactivation to Other Cellular Changes during Reprogramming of Leaf Cells

(2011) Masaki Ishikawa et al.   PLANT CELL

ArabidopsisFloral Initiator SKB1 Confers High Salt Tolerance by Regulating Transcription and Pre-mRNA Splicing through Altering Histone H4R3 and Small Nuclear Ribonucleoprotein LSM4 Methylation

(2011) Zhaoliang Zhang et al.   PLANT CELL

The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants

(2011) J. A. Banks et al.   SCIENCE

Chromatin Regulatory Mechanisms in Pluripotency

(2010) Julie A. Lessard et al.   Annual Review of Cell and Developmental Biology

Evolutionary crossroads in developmental biology: Physcomitrella patens

(2010) M. J. Prigge et al.   DEVELOPMENT

Homologues of the Arabidopsis thaliana SHI/STY/LRP1 genes control auxin biosynthesis and affect growth and development in the moss Physcomitrella patens

(2010) D. M. Eklund et al.   DEVELOPMENT

Arabidopsis Regeneration from Multiple Tissues Occurs via a Root Development Pathway

(2010) Kaoru Sugimoto et al.   DEVELOPMENTAL CELL

Tobacco Calcium-dependent Protein Kinases Are Differentially Phosphorylatedin Vivoas Part of a Kinase Cascade That Regulates Stress Response

(2010) Claus-Peter Witte et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Hormonal control of the shoot stem-cell niche

(2010) Zhong Zhao et al.   NATURE

Nuclear reprogramming to a pluripotent state by three approaches

(2010) Shinya Yamanaka et al.   NATURE

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan

(2010) Charles Plessy et al.   NATURE METHODS

Genome-Wide Classification and Evolutionary Analysis of the bHLH Family of Transcription Factors in Arabidopsis, Poplar, Rice, Moss, and Algae

(2010) L. Carretero-Paulet et al.   PLANT PHYSIOLOGY

Genome scale transcriptome analysis of shoot organogenesis in Populus

(2009) Yanghuan Bao et al.   BMC PLANT BIOLOGY

MicroRNA-145 Regulates OCT4, SOX2, and KLF4 and Represses Pluripotency in Human Embryonic Stem Cells

(2009) Na Xu et al.   CELL

Massive transcriptional start site analysis of human genes in hypoxia cells

(2009) Katsuya Tsuchihara et al.   NUCLEIC ACIDS RESEARCH

High-Resolution Analysis of the 5′-End Transcriptome Using a Next Generation DNA Sequencer

(2009) Shin-ichi Hashimoto et al.   PLoS One

Slicing across Kingdoms: Regeneration in Plants and Animals

(2008) Kenneth D. Birnbaum et al.   CELL

An Extended Transcriptional Network for Pluripotency of Embryonic Stem Cells

(2008) Jonghwan Kim et al.   CELL

An RNAi Screen of Chromatin Proteins Identifies Tip60-p400 as a Regulator of Embryonic Stem Cell Identity

(2008) Thomas G. Fazzio et al.   CELL

Unraveling Epigenetic Regulation in Embryonic Stem Cells

(2008) Marina Bibikova et al.   Cell Stem Cell

Class 1 KNOX genes are not involved in shoot development in the mossPhyscomitrella patensbut do function in sporophyte development

(2008) Keiko Sakakibara et al.   EVOLUTION & DEVELOPMENT

Stem cell transcriptome profiling via massive-scale mRNA sequencing

(2008) Nicole Cloonan et al.   NATURE METHODS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Moss (Physcomitrella patens ) GH3 proteins act in auxin homeostasis

(2008) Jutta Ludwig-Müller et al.   NEW PHYTOLOGIST

Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells

(2008) D. Phanstiel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA