A bulk segregant transcriptome analysis reveals metabolic and cellular processes associated with Orange allelic variation and fruit β-carotene accumulation in melon fruit

Systems approach for exploring the intricate associations between sweetness, color and aroma in melon fruits

(2015) Shiri Freilich et al.   BMC PLANT BIOLOGY

Overexpression of the sweet potato IbOr gene results in the increased accumulation of carotenoid and confers tolerance to environmental stresses in transgenic potato

(2015) Young-Min Goo et al.   COMPTES RENDUS BIOLOGIES

Combined transcript, proteome, and metabolite analysis of transgenic maize seeds engineered for enhanced carotenoid synthesis reveals pleotropic effects in core metabolism

(2015) Mathilde Decourcelle et al.   JOURNAL OF EXPERIMENTAL BOTANY

Carotenoid Metabolism in Plants

(2015) Nazia Nisar et al.   Molecular Plant

A ‘golden’ SNP inCmOrgoverns the fruit flesh color of melon (Cucumis melo)

(2015) Galil Tzuri et al.   PLANT JOURNAL

ArabidopsisOR proteins are the major posttranscriptional regulators of phytoene synthase in controlling carotenoid biosynthesis

(2015) Xiangjun Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromoplast biogenesis and carotenoid accumulation

(2013) Li Li et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Or mutation leads to photo-oxidative stress responses in cauliflower (Brassica oleracea) seedlings during de-etiolation

(2013) Xiao Men et al.   JOURNAL OF PLANT RESEARCH

Members of the NPF3 Transporter Subfamily Encode Pathogen-Inducible Nitrate/Nitrite Transporters in Grapevine and Arabidopsis

(2013) Sharon Pike et al.   PLANT AND CELL PHYSIOLOGY

The Maize glossy13 Gene, Cloned via BSR-Seq and Seq-Walking Encodes a Putative ABC Transporter Required for the Normal Accumulation of Epicuticular Waxes

(2013) Li Li et al.   PLoS One

Positive regulatory role of strigolactone in plant responses to drought and salt stress

(2013) C. V. Ha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Gene Mapping via Bulked Segregant RNA-Seq (BSR-Seq)

(2012) Sanzhen Liu et al.   PLoS One

The genome of melon (Cucumis melo L.)

(2012) J. Garcia-Mas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Induced mutation in β-CAROTENE HYDROXYLASE results in accumulation of β-carotene and conversion of red to orange color in pepper fruit

(2012) Yelena Borovsky et al.   THEORETICAL AND APPLIED GENETICS

Genetics and Control of Tomato Fruit Ripening and Quality Attributes

(2011) Harry J. Klee et al.   Annual Review of Genetics

Study of 'Redhaven' peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid and norisoprenoid volatile metabolism

(2011) Federica Brandi et al.   BMC PLANT BIOLOGY

Plastid structure and carotenogenic gene expression in red- and white-fleshed loquat (Eriobotrya japonica) fruits

(2011) Xiumin Fu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Combined transcriptome, genetic diversity and metabolite profiling in tomato fruit reveals that the ethylene response factor SlERF6 plays an important role in ripening and carotenoid accumulation

(2011) Je Min Lee et al.   PLANT JOURNAL

Metabolism of soluble sugars in developing melon fruit: a global transcriptional view of the metabolic transition to sucrose accumulation

(2011) Nir Dai et al.   PLANT MOLECULAR BIOLOGY

The Tomato MADS-Box Transcription Factor RIPENING INHIBITOR Interacts with Promoters Involved in Numerous Ripening Processes in a COLORLESS NONRIPENING-Dependent Manner

(2011) C. Martel et al.   PLANT PHYSIOLOGY

Gene Structures, Classification and Expression Models of the AP2/EREBP Transcription Factor Family in Rice

(2010) Akhter Most Sharoni et al.   PLANT AND CELL PHYSIOLOGY

A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening

(2010) Mi-Young Chung et al.   PLANT JOURNAL

Apocarotenoids: hormones, mycorrhizal metabolites and aroma volatiles

(2010) Michael H. Walter et al.   PLANTA

Direct regulation of phytoene synthase gene expression and carotenoid biosynthesis by phytochrome-interacting factors

(2010) G. Toledo-Ortiz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A genetic map of melon highly enriched with fruit quality QTLs and EST markers, including sugar and carotenoid metabolism genes

(2010) R. Harel-Beja et al.   THEORETICAL AND APPLIED GENETICS

Source to sink: regulation of carotenoid biosynthesis in plants

(2010) Christopher I. Cazzonelli et al.   TRENDS IN PLANT SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Plant MetGenMAP: An Integrative Analysis System for Plant Systems Biology

(2009) J.-G. Joung et al.   PLANT PHYSIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Melon Fruits: Genetic Diversity, Physiology, and Biotechnology Features

(2008) Hector G. Nuñez-Palenius et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Effect of the cauliflower Or transgene on carotenoid accumulation and chromoplast formation in transgenic potato tubers

(2008) A. B. Lopez et al.   JOURNAL OF EXPERIMENTAL BOTANY

The molecular and biochemical basis for varietal variation in sesquiterpene content in melon (Cucumis melo L.) rinds

(2008) Vitaly Portnoy et al.   PLANT MOLECULAR BIOLOGY