Integrated transcriptomic and metabolomic analyses of glutamine metabolism genes unveil key players in Oryza sativa (L.) to ameliorate the unique and combined abiotic stress tolerance

Global transcriptome analysis of novel stress associated protein (SAP) genes expression dynamism of combined abiotic stresses in Oryza sativa (L.)

(2020) Pandiyan Muthuramalingam et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Global integrated omics expression analyses of abiotic stress signaling HSF transcription factor genes in Oryza sativa L.: An in silico approach

(2019) Pandiyan Muthuramalingam et al.   GENOMICS

Genome-wide identification of major transcription factor superfamilies in rice identifies key candidates involved in abiotic stress dynamism

(2018) Pandiyan Muthuramalingam et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

Global analysis of threonine metabolism genes unravel key players in rice to improve the abiotic stress tolerance

(2018) Pandiyan Muthuramalingam et al.   Scientific Reports

Global Transcriptome Analysis of Combined Abiotic Stress Signaling Genes Unravels Key Players in Oryza sativa L.: An In silico Approach

(2017) Pandiyan Muthuramalingam et al.   Frontiers in Plant Science

Analysis of carotenogenic genes promoters and WRKY transcription factors in response to salt stress in Dunaliella bardawil

(2017) Ming-Hua Liang et al.   Scientific Reports

Global profiling of phytohormone dynamics during combined drought and pathogen stress in Arabidopsis thaliana reveals ABA and JA as major regulators

(2017) Aarti Gupta et al.   Scientific Reports

Pivotal role of glutamine synthetase in ammonia detoxification

(2016) Theodorus B.M. Hakvoort et al.   HEPATOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Modeling Rice Metabolism: From Elucidating Environmental Effects on Cellular Phenotype to Guiding Crop Improvement

(2016) Meiyappan Lakshmanan et al.   Frontiers in Plant Science

Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots

(2015) Chia-Cheng Kan et al.   BMC GENOMICS

Integrated metabolomics for abiotic stress responses in plants

(2015) Ryo Nakabayashi et al.   CURRENT OPINION IN PLANT BIOLOGY

The Stable Level of Glutamine synthetase 2 Plays an Important Role in Rice Growth and in Carbon-Nitrogen Metabolic Balance

(2015) Aili Bao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Metabolite Profiling of Diverse Rice Germplasm and Identification of Conserved Metabolic Markers of Rice Roots in Response to Long-Term Mild Salinity Stress

(2015) Myung Nam et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Amino Acid Catabolism in Plants

(2015) Tatjana M. Hildebrandt et al.   Molecular Plant

Integrated Metabolomics and Transcriptomics Reveal Enhanced Specialized Metabolism inMedicago truncatulaRoot Border Cells

(2015) Bonnie S. Watson et al.   PLANT PHYSIOLOGY

GSDS 2.0: an upgraded gene feature visualization server

(2014) Bo Hu et al.   BIOINFORMATICS

A Review of the “Omics” Approach to Biomarkers of Oxidative Stress in Oryza sativa

(2013) Nyuk Ma et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Nitrogen-Dependent Regulation of De Novo Cytokinin Biosynthesis in Rice: The Role of Glutamine Metabolism as an Additional Signal

(2013) Tomoe Kamada-Nobusada et al.   PLANT AND CELL PHYSIOLOGY

Identification and validation of promoters and cis-acting regulatory elements

(2013) Carlos M. Hernandez-Garcia et al.   PLANT SCIENCE

RiceXPro Version 3.0: expanding the informatics resource for rice transcriptome

(2012) Yutaka Sato et al.   NUCLEIC ACIDS RESEARCH

A Genome-Wide Regulatory Framework Identifies Maize Pericarp Color1 Controlled Genes

(2012) K. Morohashi et al.   PLANT CELL

Construction of Stress Responsive Synthetic Promoters and Analysis of Their Activity in Transgenic Arabidopsis thaliana

(2012) Lei Hou et al.   PLANT MOLECULAR BIOLOGY REPORTER

Mining the Biodiversity of Plants: A Revolution in the Making

(2012) V. De Luca et al.   SCIENCE

Metabolomics for Functional Genomics, Systems Biology, and Biotechnology

(2009) Kazuki Saito et al.   Annual Review of Plant Biology

Genetical metabolomics: closing in on phenotypes

(2009) Joost JB Keurentjes   CURRENT OPINION IN PLANT BIOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Metabolomic Screening Applied to Rice FOX Arabidopsis Lines Leads to the Identification of a Gene-Changing Nitrogen Metabolism

(2009) Doris Albinsky et al.   Molecular Plant

Members of the LBD Family of Transcription Factors Repress Anthocyanin Synthesis and Affect Additional Nitrogen Responses in Arabidopsis

(2009) G. Rubin et al.   PLANT CELL

AtMetExpress Development: A Phytochemical Atlas of Arabidopsis Development

(2009) F. Matsuda et al.   PLANT PHYSIOLOGY

Regulation of glutamine synthetase 1 and amino acids transport in the phloem of young wheat plants

(2009) Carla Caputo et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Rice Metabolomics

(2008) Akira Oikawa et al.   Rice

Drought tolerance improvement in crop plants: An integrated view from breeding to genomics

(2007) Luigi Cattivelli et al.   FIELD CROPS RESEARCH