TFs for TEs: the transcription factor repertoire of mammalian transposable elements
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
TFs for TEs: the transcription factor repertoire of mammalian transposable elements
Authors
Keywords
-
Journal
GENES & DEVELOPMENT
Volume 35, Issue 1-2, Pages 22-39
Publisher
Cold Spring Harbor Laboratory
Online
2021-01-05
DOI
10.1101/gad.344473.120
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Vertebrate Lineages Exhibit Diverse Patterns of Transposable Element Regulation and Expression across Tissues
- (2020) Giulia I M Pasquesi et al. Genome Biology and Evolution
- KRAB-zinc finger protein gene expansion in response to active retrotransposons in the murine lineage
- (2020) Gernot Wolf et al. eLife
- Heterochromatin establishment during early mammalian development is regulated by pericentromeric RNA and characterized by non-repressive H3K9me3
- (2020) Adam Burton et al. NATURE CELL BIOLOGY
- DNA methylation enables transposable element-driven genome expansion
- (2020) Wanding Zhou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Distinct contributions of DNA methylation and histone acetylation to the genomic occupancy of transcription factors
- (2020) Martin Cusack et al. GENOME RESEARCH
- Transposable elements drive widespread expression of oncogenes in human cancers
- (2019) Hyo Sik Jang et al. NATURE GENETICS
- Human transposons are an abundant supply of transcription factor binding sites and promoter activities in breast cancer cell lines
- (2019) Jiayue-Clara Jiang et al. Mobile DNA
- Subtype classification and functional annotation of L1Md retrotransposon promoters
- (2019) Meng Zhou et al. Mobile DNA
- LINE-1 Evasion of Epigenetic Repression in Humans
- (2019) Francisco J. Sanchez-Luque et al. MOLECULAR CELL
- Specific enhancer selection by IRF3, IRF5 and IRF9 is determined by ISRE half-sites, 5′ and 3′ flanking bases, collaborating transcription factors and the chromatin environment in a combinatorial fashion
- (2019) Mária Csumita et al. NUCLEIC ACIDS RESEARCH
- Transposable elements generate regulatory novelty in a tissue-specific fashion
- (2018) Marco Trizzino et al. BMC GENOMICS
- Chromatin Accessibility Landscape in Human Early Embryos and Its Association with Evolution
- (2018) Lei Gao et al. CELL
- Reprogramming of H3K9me3-dependent heterochromatin during mammalian embryo development
- (2018) Chenfei Wang et al. NATURE CELL BIOLOGY
- Transcription factor profiling reveals molecular choreography and key regulators of human retrotransposon expression
- (2018) Xiaoji Sun et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Nimble and Ready to Mingle: Transposon Outbursts of Early Development
- (2018) Diego Rodriguez-Terrones et al. TRENDS IN GENETICS
- Systematic perturbation of retroviral LTRs reveals widespread long-range effects on human gene regulation
- (2018) Daniel R Fuentes et al. eLife
- SOX-11 regulates LINE-1 retrotransposon activity during neuronal differentiation
- (2018) Andrés J. Orqueda et al. FEBS LETTERS
- Heritable L1 retrotransposition in the mouse primordial germline and early embryo
- (2017) Sandra R. Richardson et al. GENOME RESEARCH
- Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes
- (2017) Vedran Franke et al. GENOME RESEARCH
- KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks
- (2017) Michaël Imbeault et al. NATURE
- LINE-1 activation after fertilization regulates global chromatin accessibility in the early mouse embryo
- (2017) Joanna W Jachowicz et al. NATURE GENETICS
- DUX-family transcription factors regulate zygotic genome activation in placental mammals
- (2017) Alberto De Iaco et al. NATURE GENETICS
- Conserved roles of mouse DUX and human DUX4 in activating cleavage-stage genes and MERVL/HERVL retrotransposons
- (2017) Peter G Hendrickson et al. NATURE GENETICS
- Conservation and innovation in the DUX4-family gene network
- (2017) Jennifer L Whiddon et al. NATURE GENETICS
- Deficiency of microRNAmiR-34aexpands cell fate potential in pluripotent stem cells
- (2017) Yong Jin Choi et al. SCIENCE
- The Role of KRAB-ZFPs in Transposable Element Repression and Mammalian Evolution
- (2017) Peng Yang et al. TRENDS IN GENETICS
- Systematic identification and characterization of regulatory elements derived from human endogenous retroviruses
- (2017) Jumpei Ito et al. PLoS Genetics
- Hide and seek: how chromatin-based pathways silence retroelements in the mammalian germline
- (2016) Antoine Molaro et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Long Terminal Repeats: From Parasitic Elements to Building Blocks of the Transcriptional Regulatory Repertoire
- (2016) Peter J. Thompson et al. MOLECULAR CELL
- The landscape of accessible chromatin in mammalian preimplantation embryos
- (2016) Jingyi Wu et al. NATURE
- Regulatory activities of transposable elements: from conflicts to benefits
- (2016) Edward B. Chuong et al. NATURE REVIEWS GENETICS
- DUX4 recruits p300/CBP through its C-terminus and induces global H3K27 acetylation changes
- (2016) Si Ho Choi et al. NUCLEIC ACIDS RESEARCH
- Classification and characterization of human endogenous retroviruses; mosaic forms are common
- (2016) Laura Vargiu et al. Retrovirology
- Regulatory evolution of innate immunity through co-option of endogenous retroviruses
- (2016) E. B. Chuong et al. SCIENCE
- Activation of individual L1 retrotransposon instances is restricted to cell-type dependent permissive loci
- (2016) Claude Philippe et al. eLife
- Restricting retrotransposons: a review
- (2016) John L. Goodier Mobile DNA
- Roles for retrotransposon insertions in human disease
- (2016) Dustin C. Hancks et al. Mobile DNA
- Primate-Specific ORF0 Contributes to Retrotransposon-Mediated Diversity
- (2015) Ahmet M. Denli et al. CELL
- Dynamic Transcription of Distinct Classes of Endogenous Retroviral Elements Marks Specific Populations of Early Human Embryonic Cells
- (2015) Jonathan Göke et al. Cell Stem Cell
- p53 genes function to restrain mobile elements
- (2015) Annika Wylie et al. GENES & DEVELOPMENT
- Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells
- (2015) Edward J. Grow et al. NATURE
- Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly
- (2015) Takashi Ishiuchi et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The Dfam database of repetitive DNA families
- (2015) Robert Hubley et al. NUCLEIC ACIDS RESEARCH
- Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly
- (2015) Takashi Ishiuchi et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- As Time Goes by: KRABs Evolve to KAP Endogenous Retroelements
- (2014) Michael Imbeault et al. DEVELOPMENTAL CELL
- Evolutionally dynamic L1 regulation in embryonic stem cells
- (2014) N. Castro-Diaz et al. GENES & DEVELOPMENT
- Higher chromatin mobility supports totipotency and precedes pluripotency in vivo
- (2014) A. Bo kovi et al. GENES & DEVELOPMENT
- Widespread contribution of transposable elements to the innovation of gene regulatory networks
- (2014) Vasavi Sundaram et al. GENOME RESEARCH
- An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons
- (2014) Frank M. J. Jacobs et al. NATURE
- Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells
- (2014) Jichang Wang et al. NATURE
- DNA methylation dynamics of the human preimplantation embryo
- (2014) Zachary D. Smith et al. NATURE
- Chromatin dynamics in the regulation of cell fate allocation during early embryogenesis
- (2014) Adam Burton et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Dynamic regulation of human endogenous retroviruses mediates factor-induced reprogramming and differentiation potential
- (2014) M. Ohnuki et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
- (2014) J. Vierstra et al. SCIENCE
- Exaptation of Transposable Elements into Novel Cis-Regulatory Elements: Is the Evidence Always Strong?
- (2013) F. S. J. de Souza et al. MOLECULAR BIOLOGY AND EVOLUTION
- Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA
- (2013) Anas Fadloun et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Endogenous retrovirus-K promoter: a landing strip for inflammatory transcription factors?
- (2013) Mamneet Manghera et al. Retrovirology
- The Majority of Primate-Specific Regulatory Sequences Are Derived from Transposable Elements
- (2013) Pierre-Étienne Jacques et al. PLoS Genetics
- DUX4 Binding to Retroelements Creates Promoters That Are Active in FSHD Muscle and Testis
- (2013) Janet M. Young et al. PLoS Genetics
- Transposable Elements: An Abundant and Natural Source of Regulatory Sequences for Host Genes
- (2012) Rita Rebollo et al. Annual Review of Genetics
- Sense transcripts originated from an internal part of the human retrotransposon LINE-1 5′ UTR
- (2012) Elena A. Alexandrova et al. GENE
- DUX4 Activates Germline Genes, Retroelements, and Immune Mediators: Implications for Facioscapulohumeral Dystrophy
- (2011) Linda N. Geng et al. DEVELOPMENTAL CELL
- Coevolution of retroelements and tandem zinc finger genes
- (2011) J. H. Thomas et al. GENOME RESEARCH
- Origin and evolution of SINEs in eukaryotic genomes
- (2011) D A Kramerov et al. HEREDITY
- Expression of the Human Endogenous Retrovirus (HERV) Group HML-2/HERV-K Does Not Depend on Canonical Promoter Elements but Is Regulated by Transcription Factors Sp1 and Sp3
- (2011) N. V. Fuchs et al. JOURNAL OF VIROLOGY
- Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
- (2011) A. P. Jason de Koning et al. PLoS Genetics
- Alu elements: know the SINEs
- (2011) Prescott Deininger GENOME BIOLOGY
- LINE-1 Retrotransposition Activity in Human Genomes
- (2010) Christine R. Beck et al. CELL
- Stepwise Histone Replacement by SWR1 Requires Dual Activation with Histone H2A.Z and Canonical Nucleosome
- (2010) Ed Luk et al. CELL
- Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species
- (2010) D. Xie et al. GENOME RESEARCH
- Transposable elements in the mammalian germline: a comfortable niche or a deadly trap?
- (2010) N Zamudio et al. HEREDITY
- KAP1 controls endogenous retroviruses in embryonic stem cells
- (2010) Helen M. Rowe et al. NATURE
- Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET
- (2010) Toshiyuki Matsui et al. NATURE
- Transposable elements have rewired the core regulatory network of human embryonic stem cells
- (2010) Galih Kunarso et al. NATURE GENETICS
- Endogenous retroviral LTRs as promoters for human genes: A critical assessment
- (2009) Carla J. Cohen et al. GENE
- Isolation of cancer-specific chimeric transcripts induced by hypomethylation of the LINE-1 antisense promoter
- (2009) Hazel A. Cruickshanks et al. GENOMICS
- The regulated retrotransposon transcriptome of mammalian cells
- (2009) Geoffrey J Faulkner et al. NATURE GENETICS
- Wnt-mediated activation of NeuroD1 and retro-elements during adult neurogenesis
- (2009) Tomoko Kuwabara et al. NATURE NEUROSCIENCE
- p53 responsive elements in human retrotransposons
- (2009) C R Harris et al. ONCOGENE
- Adaptive Evolution in Zinc Finger Transcription Factors
- (2009) Ryan O. Emerson et al. PLoS Genetics
- Retrotransposons Revisited: The Restraint and Rehabilitation of Parasites
- (2008) John L. Goodier et al. CELL
- Evolution of the mammalian transcription factor binding repertoire via transposable elements
- (2008) G. Bourque et al. GENOME RESEARCH
- IRF-1 Is Required for Full NF- B Transcriptional Activity at the Human Immunodeficiency Virus Type 1 Long Terminal Repeat Enhancer
- (2008) M. Sgarbanti et al. JOURNAL OF VIROLOGY
- Using Alu Elements as Polyadenylation Sites: A Case of Retroposon Exaptation
- (2008) C. Chen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Transposable elements and the evolution of regulatory networks
- (2008) Cédric Feschotte NATURE REVIEWS GENETICS
- Human cis natural antisense transcripts initiated by transposable elements
- (2008) Andrew B. Conley et al. TRENDS IN GENETICS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More