Gene expression plasticity and desert adaptation in house mice

Comparative and population genomics approaches reveal the basis of adaptation to deserts in a small rodent

(2020) Anna Tigano et al.   MOLECULAR ECOLOGY

The gut microbiota and Bergmann’s rule in wild house mice

(2020) Taichi A. Suzuki et al.   MOLECULAR ECOLOGY

Gene Expression Networks Across Multiple Tissues Are Associated with Rates of Molecular Evolution in Wild House Mice

(2019) Katya Mack et al.   Genes

Phenotypic plasticity, global change, and the speed of adaptive evolution

(2019) Patricia Gibert et al.   Current Opinion in Insect Science

An association between differential expression and genetic divergence in the Patagonian olive mouse (Abrothrix olivacea )

(2018) Facundo M. Giorello et al.   MOLECULAR ECOLOGY

The Genetic Basis of Adaptation following Plastic Changes in Coloration in a Novel Environment

(2018) Ammon Corl et al.   CURRENT BIOLOGY

Gene regulation underlies environmental adaptation in house mice

(2018) Katya L Mack et al.   GENOME RESEARCH

Insulin resistance in cavefish as an adaptation to a nutrient-limited environment

(2018) Misty R. Riddle et al.   NATURE

Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal

(2018) Choongwon Jeong et al.   PLoS Genetics

The genomic basis of environmental adaptation in house mice

(2018) Megan Phifer-Rixey et al.   PLoS Genetics

Maladaptive phenotypic plasticity in cardiac muscle growth is suppressed in high‐altitude deer mice

(2018) Jonathan P. Velotta et al.   EVOLUTION

DGCA: A comprehensive R package for Differential Gene Correlation Analysis

(2016) Andrew T. McKenzie et al.   BMC Systems Biology

Can a Network Approach Resolve How Adaptive vs Nonadaptive Plasticity Impacts Evolutionary Trajectories?

(2016) Eva K. Fischer et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Evaluating ‘Plasticity-First’ Evolution in Nature: Key Criteria and Empirical Approaches

(2016) Nicholas A. Levis et al.   TRENDS IN ECOLOGY & EVOLUTION

Experimental Evolution of Gene Expression and Plasticity in Alternative Selective Regimes

(2016) Yuheng Huang et al.   PLoS Genetics

Aquaporins in Desert Rodent Physiology

(2015) Thomas L. Pannabecker   BIOLOGICAL BULLETIN

Non-adaptive plasticity potentiates rapid adaptive evolution of gene expression in nature

(2015) Cameron K. Ghalambor et al.   NATURE

Insights into mammalian biology from the wild house mouse Mus musculus

(2015) Megan Phifer-Rixey et al.   eLife

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Natural selection and the genetic basis of osmoregulation in heteromyid rodents as revealed by RNA-seq

(2014) Nicholas J. Marra et al.   MOLECULAR ECOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

A priori and a posteriori approaches for finding genes of evolutionary interest in non-model species: Osmoregulatory genes in the kidney transcriptome of the desert rodent Dipodomys spectabilis (banner-tailed kangaroo rat)

(2012) Nicholas J. Marra et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Role of apolipoprotein E in renal damage protection

(2011) F. Bonomini et al.   HISTOCHEMISTRY AND CELL BIOLOGY

Natural selection on EPAS1 (HIF2 ) associated with low hemoglobin concentration in Tibetan highlanders

(2010) C. M. Beall et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Evidence for High-Altitude Adaptation in Tibet

(2010) T. S. Simonson et al.   SCIENCE

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

(2010) X. Yi et al.   SCIENCE

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Discrepancy between serum levels of low molecular weight proteins in acute kidney injury model rats with bilateral ureteral obstruction and bilateral nephrectomy

(2009) Hidetoshi Tsuda et al.   Clinical and Experimental Nephrology

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS