A developmental stage-specific network approach for studying dynamic co-regulation of transcription factors and microRNAs during craniofacial development

FOXM1 is a novel predictor of recurrence in patients with oral squamous cell carcinoma associated with an increase in epithelial‑mesenchymal transition

(2019) Ya‑Dong Luo et al.   Molecular Medicine Reports

Wnt signaling in orofacial clefts: crosstalk, pathogenesis and models

(2019) Kurt Reynolds et al.   Disease Models & Mechanisms

Network-based identification of critical regulators as putative drivers of human cleft lip

(2019) Aimin Li et al.   BMC Medical Genomics

MicroRNA-655-3p and microRNA-497-5p inhibit cell proliferation in cultured human lip cells through the regulation of genes related to human cleft lip

(2019) Mona Gajera et al.   BMC Medical Genomics

WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs

(2019) Yuxing Liao et al.   NUCLEIC ACIDS RESEARCH

MicroRNA-374a, -4680, and -133b suppress cell proliferation through the regulation of genes associated with human cleft palate in cultured human palate cells

(2019) Akiko Suzuki et al.   BMC Medical Genomics

miR-340-5p Suppresses Aggressiveness in Glioblastoma Multiforme by Targeting Bcl-w and Sox2

(2019) Sanghwa Kim et al.   Molecular Therapy-Nucleic Acids

MicroRNA-124-3p suppresses mouse lip mesenchymal cell proliferation through the regulation of genes associated with cleft lip in the mouse

(2019) Akiko Suzuki et al.   BMC GENOMICS

Critical microRNAs and regulatory motifs in cleft palate identified by a conserved miRNA–TF–gene network approach in humans and mice

(2019) Aimin Li et al.   BRIEFINGS IN BIOINFORMATICS

Orofacial Muscles: Embryonic Development and Regeneration after Injury

(2019) D.H. Rosero Salazar et al.   JOURNAL OF DENTAL RESEARCH

MiR-129-5p suppresses gastric cancer cell invasion and proliferation by inhibiting COL1A1

(2018) Quan Wang et al.   Biochemistry and Cell Biology

LncRNA HIF1A-AS2 positively affects the progression and EMT formation of colorectal cancer through regulating miR-129-5p and DNMT3A

(2018) Jinguan Lin et al.   BIOMEDICINE & PHARMACOTHERAPY

Cancer stem cells and hypoxia-inducible factors (Review)

(2018) Wei-Wei Tong et al.   INTERNATIONAL JOURNAL OF ONCOLOGY

Assessing the association between hypoxia during craniofacial development and oral clefts

(2018) Erika Calvano Küchler et al.   Journal of Applied Oral Science

Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis

(2018) Akiko Suzuki et al.   MECHANISMS OF DEVELOPMENT

The Comparative Toxicogenomics Database: update 2019

(2018) Allan Peter Davis et al.   NUCLEIC ACIDS RESEARCH

FoxO6 regulates Hippo signaling and growth of the craniofacial complex

(2018) Zhao Sun et al.   PLoS Genetics

miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions

(2017) Chih-Hung Chou et al.   NUCLEIC ACIDS RESEARCH

A shared Runx1-bound Zbtb16 enhancer directs innate and innate-like lymphoid lineage development

(2017) Ai-Ping Mao et al.   Nature Communications

Hypoxia: From Placental Development to Fetal Programming

(2017) Lais Fajersztajn et al.   Birth Defects Research

EW_dmGWAS: edge-weighted dense module search for genome-wide association studies and gene expression profiles

(2015) Quan Wang et al.   BIOINFORMATICS

Systematic dissection of dysregulated transcription factor–miRNA feed-forward loops across tumor types

(2015) Wei Jiang et al.   BRIEFINGS IN BIOINFORMATICS

Molecular mechanisms of midfacial developmental defects

(2015) Akiko Suzuki et al.   DEVELOPMENTAL DYNAMICS

MicroRNA-129-5p modulates epithelial-to-mesenchymal transition by targeting SIP1 and SOX4 during peritoneal dialysis

(2015) Li Xiao et al.   LABORATORY INVESTIGATION

Predicting effective microRNA target sites in mammalian mRNAs

(2015) Vikram Agarwal et al.   eLife

Molecular Anatomy of Palate Development

(2015) Andrew S. Potter et al.   PLoS One

Classification, Epidemiology, and Genetics of Orofacial Clefts

(2014) Stephanie E. Watkins et al.   CLINICS IN PLASTIC SURGERY

Integrative Identification of Deregulated MiRNA/TF-Mediated Gene Regulatory Loops and Networks in Prostate Cancer

(2014) Ali Sobhi Afshar et al.   PLoS One

Differential modulation of cell cycle progression distinguishes members of the myogenic regulatory factor family of transcription factors

(2013) Kulwant Singh et al.   FEBS Journal

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

Effects of embryonic hypoxia on lip formation

(2012) Ryosuke Nagaoka et al.   BIRTH DEFECTS RESEARCH PART A-CLINICAL AND MOLECULAR TERATOLOGY

Identification of candidate downstream targets of TGFβ signaling during palate development by genome-wide transcript profiling

(2012) Richard C. Pelikan et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Personalized Pathway Enrichment Map of Putative Cancer Genes from Next Generation Sequencing Data

(2012) Peilin Jia et al.   PLoS One

TCF/LEFs and Wnt Signaling in the Nucleus

(2012) K. M. Cadigan et al.   Cold Spring Harbor Perspectives in Biology

Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma

(2012) Jingchun Sun et al.   PLoS Computational Biology

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Mesothelial- and epithelial-derived FGF9 have distinct functions in the regulation of lung development

(2011) Y. Yin et al.   DEVELOPMENT

Palatogenesis: morphogenetic and molecular mechanisms of secondary palate development

(2011) J. O. Bush et al.   DEVELOPMENT

Pathway-based analysis of GWAS datasets: effective but caution required

(2011) Peilin Jia et al.   INTERNATIONAL JOURNAL OF NEUROPSYCHOPHARMACOLOGY

Fibroblast Growth Factor 9 (FGF9)-Pituitary Homeobox 2 (PITX2) Pathway Mediates Transforming Growth Factor β (TGFβ) Signaling to Regulate Cell Proliferation in Palatal Mesenchyme during Mouse Palatogenesis

(2011) Jun-ichi Iwata et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

MicroRNA-375 targets AEG-1 in hepatocellular carcinoma and suppresses liver cancer cell growth in vitro and in vivo

(2011) X-X He et al.   ONCOGENE

The mechanism of TGF-β signaling during palate development

(2011) J Iwata et al.   ORAL DISEASES

dmGWAS: dense module searching for genome-wide association studies in protein–protein interaction networks

(2010) Peilin Jia et al.   BIOINFORMATICS

A Novel microRNA and transcription factor mediated regulatory network in schizophrenia

(2010) An-Yuan Guo et al.   BMC Systems Biology

Mesenchymal cell remodeling during mouse secondary palate reorientation

(2010) Jiu-Zhen Jin et al.   DEVELOPMENTAL DYNAMICS

Cooperation between the transcription factors p63 and IRF6 is essential to prevent cleft palate in mice

(2010) Helen A. Thomason et al.   JOURNAL OF CLINICAL INVESTIGATION

Biological Mechanisms in Palatogenesis and Cleft Palate

(2009) L. Meng et al.   JOURNAL OF DENTAL RESEARCH

The BTB–zinc finger transcriptional regulator PLZF controls the development of invariant natural killer T cell effector functions

(2008) Damian Kovalovsky et al.   NATURE IMMUNOLOGY