Gene expression patterns of red sea urchins (Mesocentrotus franciscanus) exposed to different combinations of temperature and pCO2 during early development

The effects of temperature and pCO2 on the size, thermal tolerance and metabolic rate of the red sea urchin (Mesocentrotus franciscanus) during early development

(2020) Juliet M. Wong et al.   MARINE BIOLOGY

Vertical distribution of echinoid larvae in pH stratified water columns

(2020) Elizaldy A. Maboloc et al.   MARINE BIOLOGY

Molecular mechanisms underpinning transgenerational plasticity in the green sea urchin Psammechinus miliaris

(2019) Melody S. Clark et al.   Scientific Reports

Transcriptional profiles of early stage red sea urchins (Mesocentrotus franciscanus) reveal differential regulation of gene expression across development

(2019) Juliet M. Wong et al.   Marine Genomics

Marine Environmental Epigenetics

(2018) Jose M. Eirin-Lopez et al.   Annual Review of Marine Science

Transcriptomics reveal transgenerational effects in purple sea urchin embryos: Adult acclimation to upwelling conditions alters the response of their progeny to differential p CO2 levels

(2018) Juliet M. Wong et al.   MOLECULAR ECOLOGY

Adaptive comanagement to achieve climate-ready fisheries

(2018) Jono R. Wilson et al.   Conservation Letters

Longer and more frequent marine heatwaves over the past century

(2018) Eric C. J. Oliver et al.   Nature Communications

Emerging risks from marine heat waves

(2018) Thomas L. Frölicher et al.   Nature Communications

Coral epigenetic responses to nutrient stress: Histone H2A.X phosphorylation dynamics and DNA methylation in the staghorn coral Acropora cervicornis

(2018) Javier A. Rodriguez-Casariego et al.   Ecology and Evolution

Genomic characterization of the evolutionary potential of the sea urchin Strongylocentrotus droebachiensis facing ocean acidification

(2017) Daniel E. Runcie et al.   Genome Biology and Evolution

Satellite sea surface temperatures along the West Coast of the United States during the 2014-2016 northeast Pacific marine heat wave

(2017) Chelle L. Gentemann et al.   GEOPHYSICAL RESEARCH LETTERS

Evaluating the promise and pitfalls of a potential climate change–tolerant sea urchin fishery in southern California

(2017) Kirk N Sato et al.   ICES JOURNAL OF MARINE SCIENCE

Differential expression of stress candidate genes for thermal tolerance in the sea urchin Loxechinus albus

(2017) Jonathan Vergara-Amado et al.   JOURNAL OF THERMAL BIOLOGY

Effects of ocean warming and acidification on the early benthic ontogeny of an ecologically and economically important echinoderm

(2017) PH Manríquez et al.   MARINE ECOLOGY PROGRESS SERIES

Transcriptomic responses to seawater acidification among sea urchin populations inhabiting a natural pH mosaic

(2017) Tyler G. Evans et al.   MOLECULAR ECOLOGY

Extreme weather and climate events with ecological relevance: a review

(2017) Caroline C. Ummenhofer et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Sensitivity of sea urchin fertilization to pH varies across a natural pH mosaic

(2017) Lydia Kapsenberg et al.   Ecology and Evolution

Effects of ocean warming and acidification on the early benthic ontogeny of an ecologically and economically important echinoderm

(2017) PH Manríquez et al.   MARINE ECOLOGY PROGRESS SERIES

Persistent spatial structuring of coastal ocean acidification in the California Current System

(2017) F. Chan et al.   Scientific Reports

Beyond the benchtop and the benthos: Dataset management planning and design for time series of ocean carbonate chemistry associated with Durafet®-based pH sensors

(2016) Emily B. Rivest et al.   Ecological Informatics

Interacting environmental mosaics drive geographic variation in mussel performance and predation vulnerability

(2016) Kristy J. Kroeker et al.   ECOLOGY LETTERS

Somatic recombination in adult tissues: What is there to learn?

(2016) Katarzyna Siudeja et al.   FLY

Ocean pH time-series and drivers of variability along the northern Channel Islands, California, USA

(2016) Lydia Kapsenberg et al.   LIMNOLOGY AND OCEANOGRAPHY

Epigenetics in ecology and evolution: what we know and what we need to know

(2016) Koen J. F. Verhoeven et al.   MOLECULAR ECOLOGY

Management adaptation of invertebrate fisheries to an extreme marine heat wave event at a global warming hot spot

(2016) Nick Caputi et al.   Ecology and Evolution

Present-Day Nearshore pH Differentially Depresses Fertilization in Congeneric Sea Urchins

(2016) Christina A. Frieder   BIOLOGICAL BULLETIN

Effects of Seawater Acidification on Gene Expression: Resolving Broader-Scale Trends in Sea Urchins

(2016) Tyler G. Evans et al.   BIOLOGICAL BULLETIN

Gene expression associated with white syndromes in a reef building coral, Acropora hyacinthus

(2015) Rachel M Wright et al.   BMC GENOMICS

The role of transcriptome resilience in resistance of corals to bleaching

(2015) Francois O. Seneca et al.   MOLECULAR ECOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum

(2015) Alaguraj Veluchamy et al.   GENOME BIOLOGY

Climate change and wind intensification in coastal upwelling ecosystems

(2014) W. J. Sydeman et al.   SCIENCE

Influence of temperature in thermal and oxidative stress responses in estuarine fish

(2013) D. Madeira et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Natural variation and the capacity to adapt to ocean acidification in the keystone sea urchinStrongylocentrotus purpuratus

(2013) Morgan W. Kelly et al.   GLOBAL CHANGE BIOLOGY

Signs of Adaptation to Local pH Conditions across an Environmental Mosaic in the California Current Ecosystem

(2013) M. H. Pespeni et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Multistressor Impacts of Warming and Acidification of the Ocean on Marine Invertebrates' Life Histories

(2013) M. Byrne et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Ocean warming will mitigate the effects of acidification on calcifying sea urchin larvae (Heliocidaris tuberculata) from the Australian global warming hot spot

(2013) Maria Byrne et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Sea urchin barrens as alternative stable states of collapsed kelp ecosystems

(2013) K Filbee-Dexter et al.   MARINE ECOLOGY PROGRESS SERIES

Transcriptomic responses to ocean acidification in larval sea urchins from a naturally variable pH environment

(2013) Tyler G. Evans et al.   MOLECULAR ECOLOGY

The stunting effect of a high CO2 ocean on calcification and development in sea urchin larvae, a synthesis from the tropics to the poles

(2013) M. Byrne et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolutionary change during experimental ocean acidification

(2013) M. H. Pespeni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temperature and CO2 additively regulate physiology, morphology and genomic responses of larval sea urchins, Strongylocentrotus purpuratus

(2013) J. L. Padilla-Gamino et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Persistent carry-over effects of planktonic exposure to ocean acidification in the Olympia oyster

(2012) Annaliese Hettinger et al.   ECOLOGY

A decade of climate change experiments on marine organisms: procedures, patterns and problems

(2012) Thomas Wernberg et al.   GLOBAL CHANGE BIOLOGY

Respiratory response of the intertidal seastar Parvulastra exigua to contemporary and near-future pulses of warming and hypercapnia

(2012) D.J. McElroy et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Impact of ocean warming on the early ontogeny of cephalopods: a metabolic approach

(2012) Marta S. Pimentel et al.   MARINE BIOLOGY

Elevated temperature elicits greater effects than decreased pH on the development, feeding and metabolism of northern shrimp (Pandalus borealis) larvae

(2012) Maj Arnberg et al.   MARINE BIOLOGY

Genetics of gene expression responses to temperature stress in a sea urchin gene network

(2012) DANIEL E. RUNCIE et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Acidified seawater impacts sea urchin larvae pH regulatory systems relevant for calcification

(2012) M. Stumpp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Influence of stocking density and temperature on early development and survival of the purple sea urchin,Strongylocentrotus purpuratus(Stimpson, 1857)

(2011) Abul Kalam Azad et al.   AQUACULTURE RESEARCH

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

CO2 induced seawater acidification impacts sea urchin larval development II: Gene expression patterns in pluteus larvae

(2011) M. Stumpp et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

CO2 induced seawater acidification impacts sea urchin larval development I: Elevated metabolic rates decrease scope for growth and induce developmental delay

(2011) M. Stumpp et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Early development and molecular plasticity in the Mediterranean sea urchin Paracentrotus lividus exposed to CO2-driven acidification

(2011) S. Martin et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Vertical distribution of marine invertebrate larvae in response to thermal stratification in the laboratory

(2011) Rémi M. Daigle et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Global change ecotoxicology: Identification of early life history bottlenecks in marine invertebrates, variable species responses and variable experimental approaches

(2011) M. Byrne   MARINE ENVIRONMENTAL RESEARCH

The Effect of Ocean Acidification on Calcifying Organisms in Marine Ecosystems: An Organism-to-Ecosystem Perspective

(2010) Gretchen E. Hofmann et al.   Annual Review of Ecology Evolution and Systematics

Meta-analysis reveals negative yet variable effects of ocean acidification on marine organisms

(2010) Kristy J. Kroeker et al.   ECOLOGY LETTERS

Elevated pCO2 increases sperm limitation and risk of polyspermy in the red sea urchin Strongylocentrotus franciscanus

(2010) KIM E. REUTER et al.   GLOBAL CHANGE BIOLOGY

Thermal tolerance of Strongylocentrotus purpuratus early life history stages: mortality, stress-induced gene expression and biogeographic patterns

(2010) LaTisha M. Hammond et al.   MARINE BIOLOGY

Impact of Ocean Warming and Ocean Acidification on Larval Development and Calcification in the Sea Urchin Tripneustes gratilla

(2010) Hannah Sheppard Brennand et al.   PLoS One

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Transcriptomic response of sea urchin larvae Strongylocentrotus purpuratus to CO2-driven seawater acidification

(2009) A. E. Todgham et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Acquisition of thermotolerance in bay scallops, Argopecten irradians irradians, via differential induction of heat shock proteins

(2009) Nicole T. Brun et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Ocean acidification alters skeletogenesis and gene expression in larval sea urchins

(2009) MJ O’Donnell et al.   MARINE ECOLOGY PROGRESS SERIES

Transcriptomic responses to heat stress and bleaching in the elkhorn coral Acropora palmata

(2009) MK DeSalvo et al.   MARINE ECOLOGY PROGRESS SERIES

ChIP–seq: advantages and challenges of a maturing technology

(2009) Peter J. Park   NATURE REVIEWS GENETICS

Ocean Acidification: The Other CO2Problem

(2008) Scott C. Doney et al.   Annual Review of Marine Science

Homologous recombination in DNA repair and DNA damage tolerance

(2008) Xuan Li et al.   CELL RESEARCH

Oxidative stress in ecology and evolution: lessons from avian studies

(2008) David Costantini   ECOLOGY LETTERS

Induced thermotolerance and expression of heat shock protein 70 in sea cucumber Apostichopus japonicus

(2008) Yunwei DONG et al.   FISHERIES SCIENCE

Predicted impact of ocean acidification on a marine invertebrate: elevated CO2 alters response to thermal stress in sea urchin larvae

(2008) Michael J. O’Donnell et al.   MARINE BIOLOGY

Effects of CO2-driven ocean acidification on the early developmental stages of invertebrates

(2008) H Kurihara   MARINE ECOLOGY PROGRESS SERIES

Evidence for Upwelling of Corrosive "Acidified" Water onto the Continental Shelf

(2008) R. A. Feely et al.   SCIENCE