Nebulosa recovers single-cell gene expression signals by kernel density estimation

Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells

(2020) Hiroshi Ochiai et al.   Science Advances

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

Recovering Gene Interactions from Single-Cell Data Using Data Diffusion

(2018) David van Dijk et al.   CELL

Detection of HPV E7 transcription at single-cell resolution in epidermis

(2018) S.W. Lukowski et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Dimensionality reduction for visualizing single-cell data using UMAP

(2018) Etienne Becht et al.   NATURE BIOTECHNOLOGY

Simultaneous epitope and transcriptome measurement in single cells

(2017) Marlon Stoeckius et al.   NATURE METHODS

Massively parallel digital transcriptional profiling of single cells

(2017) Grace X. Y. Zheng et al.   Nature Communications

A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications

(2017) Ashraful Haque et al.   Genome Medicine

Orchestrating high-throughput genomic analysis with Bioconductor

(2015) Wolfgang Huber et al.   NATURE METHODS

Bayesian approach to single-cell differential expression analysis

(2014) Peter V Kharchenko et al.   NATURE METHODS