Focal adhesion ribonucleoprotein complex proteins are major humoral cancer antigens and targets in autoimmune diseases

Defined lifestyle and germline factors predispose Asian populations to gastric cancer

(2020) Akihiro Suzuki et al.   Science Advances

Dynamic Recruitment of Single RNAs to Processing Bodies Depends on RNA Functionality

(2019) Sethuramasundaram Pitchiaya et al.   MOLECULAR CELL

Capturing the differences between humoral immunity in the normal and tumor environments from repertoire-seq of B-cell receptors using supervised machine learning

(2019) Hiroki Konishi et al.   BMC BIOINFORMATICS

Atlas of Subcellular RNA Localization Revealed by APEX-Seq

(2019) Furqan M. Fazal et al.   CELL

Comprehensive molecular characterization of clinical responses to PD-1 inhibition in metastatic gastric cancer

(2018) Seung Tae Kim et al.   NATURE MEDICINE

Fundamental Mechanisms of Immune Checkpoint Blockade Therapy

(2018) Spencer C. Wei et al.   Cancer Discovery

Autoantibodies to heat shock proteins 60, 70, and 90 in patients with rheumatoid arthritis

(2018) Jagoda Mantej et al.   CELL STRESS & CHAPERONES

CD47 Blockade by Hu5F9-G4 and Rituximab in Non-Hodgkin’s Lymphoma

(2018) Ranjana Advani et al.   NEW ENGLAND JOURNAL OF MEDICINE

Two rheumatoid arthritis–specific autoantigens correlate microbial immunity with autoimmune responses in joints

(2017) Annalisa Pianta et al.   JOURNAL OF CLINICAL INVESTIGATION

Mismatch repair deficiency predicts response of solid tumors to PD-1 blockade

(2017) Dung T. Le et al.   SCIENCE

Immunogenetic Profiling for Gastric Cancers Identifies Sulfated Glycosaminoglycans as Major and Functional B Cell Antigens in Human Malignancies

(2017) Hiroto Katoh et al.   Cell Reports

The Emerging Role of B Cells in Tumor Immunity

(2016) Peiling Tsou et al.   CANCER RESEARCH

Diversity and divergence of the glioma-infiltrating T-cell receptor repertoire

(2016) Jennifer S. Sims et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Circulation autoantibody against Lamin A/C in patients with Sjögren’s syndrome

(2016) Wen Zhang et al.   Oncotarget

Mapping translation 'hot-spots' in live cells by tracking single molecules of mRNA and ribosomes

(2016) Zachary B Katz et al.   eLife

Prevalence of Autoimmune Disease Among Patients With Lung Cancer

(2016) Saad A. Khan et al.   JAMA Oncology

Potential role of nuclear PD-L1 expression in cell-surface vimentin positive circulating tumor cells as a prognostic marker in cancer patients

(2016) Arun Satelli et al.   Scientific Reports

Clonality Analysis of Immunoglobulin Gene Rearrangement by Next-Generation Sequencing in Endemic Burkitt Lymphoma Suggests Antigen Drive Activation of BCR as Opposed to Sporadic Burkitt Lymphoma

(2015) Teresa Amato et al.   AMERICAN JOURNAL OF CLINICAL PATHOLOGY

Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data: Table 1.

(2015) Namita T. Gupta et al.   BIOINFORMATICS

Filopodia in cell adhesion, 3D migration and cancer cell invasion

(2015) Guillaume Jacquemet et al.   CURRENT OPINION IN CELL BIOLOGY

Heat Shock Protein 90 Is a Potential Therapeutic Target in Cholangiocarcinoma

(2015) T. Shirota et al.   MOLECULAR CANCER THERAPEUTICS

The MEME Suite

(2015) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer

(2015) N. A. Rizvi et al.   SCIENCE

Timely and spatially regulated maturation of B and T cell repertoire during human fetal development

(2015) Erez Rechavi et al.   Science Translational Medicine

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Prognostic B-cell Signatures Using mRNA-Seq in Patients with Subtype-Specific Breast and Ovarian Cancer

(2014) M. D. Iglesia et al.   CLINICAL CANCER RESEARCH

A Novel RNA Motif Mediates the Strict Nuclear Localization of a Long Noncoding RNA

(2014) B. Zhang et al.   MOLECULAR AND CELLULAR BIOLOGY

The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data

(2014) Yuichi Kodama et al.   NUCLEIC ACIDS RESEARCH

IgBLAST: an immunoglobulin variable domain sequence analysis tool

(2013) Jian Ye et al.   NUCLEIC ACIDS RESEARCH

Correction: Bacteria Regulate Intestinal Epithelial Cell Differentiation Factors Both In Vitro and In Vivo

(2013) Svetlana Becker et al.   PLoS One

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

Force Fluctuations within Focal Adhesions Mediate ECM-Rigidity Sensing to Guide Directed Cell Migration

(2012) Sergey V. Plotnikov et al.   CELL

 -Actin mRNA compartmentalization enhances focal adhesion stability and directs cell migration

(2012) Z. B. Katz et al.   GENES & DEVELOPMENT

Activation of Autoreactive B Cells by Endogenous TLR7 and TLR3 RNA Ligands

(2012) Nathaniel M. Green et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs

(2011) Anthony K L Leung et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Primary biliary cirrhosis: What do autoantibodies tell us?

(2010) Chao-Jun Hu   WORLD JOURNAL OF GASTROENTEROLOGY

Regulation of stress granule dynamics by Grb7 and FAK signalling pathway

(2008) Nien-Pei Tsai et al.   EMBO JOURNAL