Detection and Analysis of C-to-U RNA Editing in Rice Mitochondria-Encoded ORFs

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Empty Pericarp21 encodes a novel PPR-DYW protein that is required for mitochondrial RNA editing at multiple sites, complexes I and V biogenesis, and seed development in maize

(2019) Yong Wang et al.   PLoS Genetics

Plant organelle RNA editing and its specificity factors: enhancements of analyses and new database features in PREPACT 3.0

(2018) Henning Lenz et al.   BMC BIOINFORMATICS

Rice PPS1 encodes a DYW motif-containing pentatricopeptide repeat protein required for five consecutive RNA-editing sites of nad3 in mitochondria

(2018) Haijun Xiao et al.   NEW PHYTOLOGIST

Towards a comprehensive picture of C-to-U RNA editing sites in angiosperm mitochondria

(2018) Alejandro A. Edera et al.   PLANT MOLECULAR BIOLOGY

REDIdb 3.0: A Comprehensive Collection of RNA Editing Events in Plant Organellar Genomes

(2018) Claudio Lo Giudice et al.   Frontiers in Plant Science

Shaping Plant Adaptability, Genome Structure and Gene Expression through Transposable Element Epigenetic Control: Focus on Methylation

(2018) Leonardo Galindo-González et al.   Agronomy-Basel

Plant editosome database: a curated database of RNA editosome in plants

(2018) Man Li et al.   NUCLEIC ACIDS RESEARCH

RNA editing mutants as surrogates for mitochondrial SNP mutants

(2018) Mizuki Takenaka et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis

(2017) Sayed Mohammad Ebrahim Sahraeian et al.   Nature Communications

Repetitive sequences and epigenetic modification: inseparable partners play important roles in the evolution of plant sex chromosomes

(2016) Shu-Fen Li et al.   PLANTA

The Unexpected Diversity of Plant Organelle RNA Editosomes

(2016) Tao Sun et al.   TRENDS IN PLANT SCIENCE

Two RNA recognition motif-containing proteins are plant mitochondrial editing factors

(2015) Xiaowen Shi et al.   NUCLEIC ACIDS RESEARCH

Empty pericarp7encodes a mitochondrial E-subgroup pentatricopeptide repeat protein that is required forccmFNediting, mitochondrial function and seed development in maize

(2015) Feng Sun et al.   PLANT JOURNAL

RNA Recognition Motif-Containing Protein ORRM4 Broadly Affects Mitochondrial RNA Editing and Impacts Plant Development and Flowering

(2015) Xiaowen Shi et al.   PLANT PHYSIOLOGY

Variable Frequency of Plastid RNA Editing among Ferns and Repeated Loss of Uridine-to-Cytidine Editing from Vascular Plants

(2015) Wenhu Guo et al.   PLoS One

Deep sequencing of the tobacco mitochondrial transcriptome reveals expressed ORFs and numerous editing sites outside coding regions

(2014) Benjamin T Grimes et al.   BMC GENOMICS

RNA Editing in Plants and Its Evolution

(2013) Mizuki Takenaka et al.   Annual Review of Genetics

The genome and transcriptome of perennial ryegrass mitochondria

(2013) Md Islam et al.   BMC GENOMICS

The Arabidopsis thaliana RNA Editing Factor SLO2, which Affects the Mitochondrial Electron Transport Chain, Participates in Multiple Stress and Hormone Responses

(2013) Qiang Zhu et al.   Molecular Plant

Structural basis for the modular recognition of single-stranded RNA by PPR proteins

(2013) Ping Yin et al.   NATURE

Empty Pericarp5 Encodes a Pentatricopeptide Repeat Protein That Is Required for Mitochondrial RNA Editing and Seed Development in Maize

(2013) Y.-J. Liu et al.   PLANT CELL

Differential regulation of Arabidopsis plastid gene expression and RNA editing in non-photosynthetic tissues

(2013) Ching-Chih Tseng et al.   PLANT MOLECULAR BIOLOGY

Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome

(2012) Zhiyu Peng et al.   NATURE BIOTECHNOLOGY

PPR2263, a DYW-Subgroup Pentatricopeptide Repeat Protein, Is Required for Mitochondrial nad5 and cob Transcript Editing, Mitochondrion Biogenesis, and Maize Growth

(2012) D. Sosso et al.   PLANT CELL

RiceMPR25encodes a pentatricopeptide repeat protein and is essential for RNA editing ofnad5transcripts in mitochondria

(2012) Takushi Toda et al.   PLANT JOURNAL

A Complete Sequence and Transcriptomic Analyses of Date Palm (Phoenix dactylifera L.) Mitochondrial Genome

(2012) Yongjun Fang et al.   PLoS One

RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing

(2012) S. Bentolila et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recent insertion of a 52-kb mitochondrial DNA segment in the wheat lineage

(2011) Juncheng Zhang et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing

(2010) Ernesto Picardi et al.   NUCLEIC ACIDS RESEARCH

CURE-Chloroplast: A chloroplast C-to-U RNA editing predictor for seed plants

(2009) Pufeng Du et al.   BMC BIOINFORMATICS

The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments

(2009) J. P. Mower   NUCLEIC ACIDS RESEARCH

RESOPS: A Database for Analyzing the Correspondence of RNA Editing Sites to Protein Three-Dimensional Structures

(2009) Kei Yura et al.   PLANT AND CELL PHYSIOLOGY

RiceOGR1encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria

(2009) Sung-Ryul Kim et al.   PLANT JOURNAL

DNA Transfer from Organelles to the Nucleus: The Idiosyncratic Genetics of Endosymbiosis

(2008) Tatjana Kleine et al.   Annual Review of Plant Biology

Correlation between amino acid residues converted by RNA editing and functional residues in protein three-dimensional structures in plant organelles

(2008) Kei Yura et al.   BMC PLANT BIOLOGY