Why Time Matters: Codon Evolution and the Temporal Dynamics of dN/dS

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

The Neutral Theory of Molecular Evolution in the Genomic Era

(2010) Masatoshi Nei et al.   Annual Review of Genomics and Human Genetics

Don't forget the ancestral polymorphisms

(2010) D Charlesworth   HEREDITY

Why do species vary in their rate of molecular evolution?

(2009) L. Bromham   Biology Letters

A SELECTION MODEL OF MOLECULAR EVOLUTION INCORPORATING THE EFFECTIVE POPULATION SIZE

(2009) Hans Ellegren   EVOLUTION

Nonlinear Dynamics of Nonsynonymous (dN) and Synonymous (dS) Substitution Rates Affects Inference of Selection

(2009) Jochen B. W. Wolf et al.   Genome Biology and Evolution

Quantitative Prediction of Molecular Clock and Ka/Ks at Short Timescales

(2009) G. I. Peterson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hotspots of Biased Nucleotide Substitutions in Human Genes

(2009) Jonas Berglund et al.   PLOS BIOLOGY

The Impact of Natural Selection on the Genome: Emerging Patterns in Drosophila and Arabidopsis

(2008) Stephen I. Wright et al.   Annual Review of Ecology Evolution and Systematics

The Population Genetics of dN/dS

(2008) Sergey Kryazhimskiy et al.   PLoS Genetics