Microbiome Management by Biological and Chemical Treatments in Maize Is Linked to Plant Health

Impact of a synthetic fungicide (fosetyl-Al and propamocarb-hydrochloride) and a biopesticide (Clonostachys rosea) on soil bacterial, fungal, and protist communities

(2020) Bertrand Fournier et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Mortierella elongata Increases Plant Biomass among Non-Leguminous Crop Species

(2020) Kaile Zhang et al.   Agronomy-Basel

Verticillium Wilt in Oilseed Rape—the Microbiome is Crucial for Disease Outbreaks as Well as for Efficient Suppression

(2020) Daria Rybakova et al.   Plants-Basel

Ecology and Evolution of Plant Microbiomes

(2019) Viviane Cordovez et al.   Annual Review of Microbiology

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

The tea leaf microbiome shows specific responses to chemical pesticides and biocontrol applications

(2019) Tomislav Cernava et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

(2019) Víctor J. Carrión et al.   SCIENCE

Large-scale replicated field study of maize rhizosphere identifies heritable microbes

(2018) William A. Walters et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wheat rhizosphere harbors a less complex and more stable microbial co-occurrence pattern than bulk soil

(2018) Kunkun Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Why are plant-soil feedbacks so unpredictable, and what to do about it?

(2018) Jonathan R. De Long et al.   FUNCTIONAL ECOLOGY

Mechanisms of plant–soil feedback: interactions among biotic and abiotic drivers

(2018) Jonathan A. Bennett et al.   NEW PHYTOLOGIST

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

Influence of pesticide seed treatments on rhizosphere fungal and bacterial communities and leaf fungal endophyte communities in maize and soybean

(2016) Rachel Nettles et al.   APPLIED SOIL ECOLOGY

Non-target impact of fungicide tetraconazole on microbial communities in soils with different agricultural management

(2016) Sławomir Sułowicz et al.   ECOTOXICOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Molecular and morphological characterisation of Xiphinema americanum-group species (Nematoda: Dorylaimida) from California, USA, and other regions, and co-evolution of bacteria from the genus Candidatus Xiphinematobacter with nematodes

(2016)   NEMATOLOGY

Controlling the Microbiome: Microhabitat Adjustments for Successful Biocontrol Strategies in Soil and Human Gut

(2016) Eveline Adam et al.   Frontiers in Microbiology

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

The plant microbiome explored: implications for experimental botany

(2015) Gabriele Berg et al.   JOURNAL OF EXPERIMENTAL BOTANY

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Induced Systemic Resistance and the Rhizosphere Microbiome

(2013) Peter A.H.M. Bakker et al.   Plant Pathology Journal

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root-microbe systems: the effect and mode of interaction of Stress Protecting Agent (SPA) Stenotrophomonas rhizophila DSM14405T

(2013) Peyman Alavi et al.   Frontiers in Plant Science

Environmental Factors Affect Acidobacterial Communities below the Subgroup Level in Grassland and Forest Soils

(2012) Astrid Naether et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Stenotrophomonas rhizophila DSM14405T promotes plant growth probably by altering fungal communities in the rhizosphere

(2012) Christoph Stephan Schmidt et al.   BIOLOGY AND FERTILITY OF SOILS

Legacy effects of aboveground-belowground interactions

(2012) Olga Kostenko et al.   ECOLOGY LETTERS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Effect of pesticide application on soil microorganisms

(2011) Anu Kalia et al.   Archives of Agronomy and Soil Science

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant-Growth-Promoting Rhizobacteria

(2009) Ben Lugtenberg et al.   Annual Review of Microbiology

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture

(2009) Gabriele Berg   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Plant-microbe-soil interactions in the rhizosphere: an evolutionary perspective

(2009) Hans Lambers et al.   PLANT AND SOIL

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

(2008) Jos M. Raaijmakers et al.   PLANT AND SOIL