- Home
- Publications
- Publication Search
- Publication Details
Title
Ultrafast search of all deposited bacterial and viral genomic data
Authors
Keywords
-
Journal
NATURE BIOTECHNOLOGY
Volume 37, Issue 2, Pages 152-159
Publisher
Springer Nature
Online
2019-02-05
DOI
10.1038/s41587-018-0010-1
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Integrating long-range connectivity information into de Bruijn graphs
- (2018) Isaac Turner et al. BIOINFORMATICS
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
- (2018) Prashant Pandey et al. Cell Systems
- WGS to predict antibiotic MICs for Neisseria gonorrhoeae
- (2017) David W. Eyre et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Comprehensive Whole-Genome Sequencing and Reporting of Drug Resistance Profiles on Clinical Cases of Mycobacterium tuberculosis in New York State
- (2017) Joseph Shea et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples
- (2017) Antonina A. Votintseva et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Towards a genomics-informed, real-time, global pathogen surveillance system
- (2017) Jennifer L. Gardy et al. NATURE REVIEWS GENETICS
- Novel Plasmid-Mediated Colistin Resistance Gene mcr-3 in Escherichia coli
- (2017) Wenjuan Yin et al. mBio
- Global phylogenetic analysis of Escherichia coli and plasmids carrying the mcr-1 gene indicates bacterial diversity but plasmid restriction
- (2017) Sébastien Matamoros et al. Scientific Reports
- Identification of a novel plasmid-mediated colistin-resistance gene,mcr-2, inEscherichia coli, Belgium, June 2016
- (2016) Basil Britto Xavier et al. Eurosurveillance
- Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing
- (2016) K. Schmidt et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Dissemination of the mcr-1 colistin resistance gene
- (2016) Yongfei Hu et al. LANCET INFECTIOUS DISEASES
- Real-time, portable genome sequencing for Ebola surveillance
- (2016) Joshua Quick et al. NATURE
- Fast search of thousands of short-read sequencing experiments
- (2016) Brad Solomon et al. NATURE BIOTECHNOLOGY
- CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
- (2016) Baofeng Jia et al. NUCLEIC ACIDS RESEARCH
- Antimicrobial Resistance in Mycobacterium tuberculosis : The Odd One Out
- (2016) Vegard Eldholm et al. TRENDS IN MICROBIOLOGY
- Rapid Whole-Genome Sequencing of Mycobacterium tuberculosis Isolates Directly from Clinical Samples
- (2015) Amanda C. Brown et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study
- (2015) Timothy M Walker et al. LANCET INFECTIOUS DISEASES
- Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
- (2015) Phelim Bradley et al. Nature Communications
- SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
- (2014) Michael Inouye et al. Genome Medicine
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
- (2013) Keith R Bradnam et al. GigaScience
- De novo assembly and genotyping of variants using colored de Bruijn graphs
- (2012) Zamin Iqbal et al. NATURE GENETICS
- Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
- (2012) J. Pell et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The rise of a digital immune system
- (2012) Michael C Schatz et al. GigaScience
- Assemblathon 1: A competitive assessment of de novo short read assembly methods
- (2011) D. Earl et al. GENOME RESEARCH
- The Repertoire of ICE in Prokaryotes Underscores the Unity, Diversity, and Ubiquity of Conjugation
- (2011) Julien Guglielmini et al. PLoS Genetics
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started