Timing the origin of eukaryotic cellular complexity with ancient duplications
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Title
Timing the origin of eukaryotic cellular complexity with ancient duplications
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Journal
Nature Ecology & Evolution
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-10-27
DOI
10.1038/s41559-020-01320-z
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Note: Only part of the references are listed.- Isolation of an archaeon at the prokaryote–eukaryote interface
- (2020) Hiroyuki Imachi et al. NATURE
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- (2018) Joel B Dacks et al. CURRENT OPINION IN CELL BIOLOGY
- Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows
- (2018) Nidhi Shah et al. BIOINFORMATICS
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- (2018) Adrienne B Narrowe et al. Genome Biology and Evolution
- Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
- (2018) Sina M. Adl et al. JOURNAL OF EUKARYOTIC MICROBIOLOGY
- Deep mitochondrial origin outside the sampled alphaproteobacteria
- (2018) Joran Martijn et al. NATURE
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- (2018) Raúl A González-Pech et al. BIOINFORMATICS
- Genomes of Asgard archaea encode profilins that regulate actin
- (2018) Caner Akıl et al. NATURE
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- (2017) William F. Martin et al. Genome Biology and Evolution
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- (2017) Nick Lane JOURNAL OF THEORETICAL BIOLOGY
- Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
- (2017) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Asgard archaea illuminate the origin of eukaryotic cellular complexity
- (2017) Katarzyna Zaremba-Niedzwiedzka et al. NATURE
- The changing view of eukaryogenesis – fossils, cells, lineages and how they all come together
- (2016) Joel B. Dacks et al. JOURNAL OF CELL SCIENCE
- ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
- (2016) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Tracing the Archaeal Origins of Eukaryotic Membrane-Trafficking System Building Blocks
- (2016) Christen M. Klinger et al. MOLECULAR BIOLOGY AND EVOLUTION
- Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry
- (2016) Alexandros A. Pittis et al. NATURE
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- (2015) Anja Spang et al. NATURE
- eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
- (2015) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Toward major evolutionary transitions theory 2.0: Table 1.
- (2015) Eörs Szathmáry PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bacterial proteins pinpoint a single eukaryotic root
- (2015) Romain Derelle et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Eukaryotic Origins: How and When Was the Mitochondrion Acquired?
- (2014) A. M. Poole et al. Cold Spring Harbor Perspectives in Biology
- Bioenergetic Constraints on the Evolution of Complex Life
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- From archaeon to eukaryote: the evolutionary dark ages of the eukaryotic cell
- (2013) Joran Martijn et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- kClust: fast and sensitive clustering of large protein sequence databases
- (2013) Maria Hauser et al. BMC BIOINFORMATICS
- Molecular paleontology and complexity in the last eukaryotic common ancestor
- (2013) V. Lila Koumandou et al. CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY
- Ultrafast Approximation for Phylogenetic Bootstrap
- (2013) B. Q. Minh et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Sculpting the endomembrane system in deep time: high resolution phylogenetics of Rab GTPases
- (2012) M. Elias et al. JOURNAL OF CELL SCIENCE
- Modeling Protein Evolution with Several Amino Acid Replacement Matrices Depending on Site Rates
- (2012) S. Q. Le et al. MOLECULAR BIOLOGY AND EVOLUTION
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Patterns of kinesin evolution reveal a complex ancestral eukaryote with a multifunctional cytoskeleton
- (2010) Bill Wickstead et al. BMC EVOLUTIONARY BIOLOGY
- The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility
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- (2010) Nick Lane et al. NATURE
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- (2010) Morgan N. Price et al. PLoS One
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
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