Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root-knot nematode
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Title
Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root-knot nematode
Authors
Keywords
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Journal
Scientific Data
Volume 7, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-10-05
DOI
10.1038/s41597-020-00666-0
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Note: Only part of the references are listed.- Gene copy number variations as signatures of adaptive evolution in the parthenogenetic, plant‐parasitic nematode Meloidogyne incognita
- (2019) Philippe Castagnone‐Sereno et al. MOLECULAR ECOLOGY
- Plant-parasitic nematode effectors — insights into their diversity and new tools for their identification
- (2019) Paulo Vieira et al. CURRENT OPINION IN PLANT BIOLOGY
- Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest
- (2019) Georgios D. Koutsovoulos et al. Evolutionary Applications
- Virulence of Meloidogyne incognita populations and Meloidogyne enterolobii on resistant cucurbitaceous and solanaceous plant genotypes
- (2018) Johannes Hallmann et al. Journal of Plant Diseases and Protection
- UniProt: the universal protein knowledgebase
- (2018) The UniProt Consortium NUCLEIC ACIDS RESEARCH
- Comparative Genomics of Apomictic Root-Knot Nematodes: Hybridization, Ploidy, and Dynamic Genome Change
- (2017) Amir Szitenberg et al. Genome Biology and Evolution
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
- (2017) Robert M Waterhouse et al. MOLECULAR BIOLOGY AND EVOLUTION
- WormBase 2017: molting into a new stage
- (2017) Raymond Y N Lee et al. NUCLEIC ACIDS RESEARCH
- Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes
- (2017) Romain Blanc-Mathieu et al. PLoS Genetics
- Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements
- (2016) Amir Szitenberg et al. Genome Biology and Evolution
- The EMBL-EBI bioinformatics web and programmatic tools framework
- (2015) Weizhong Li et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Repbase Update, a database of repetitive elements in eukaryotic genomes
- (2015) Weidong Bao et al. Mobile DNA
- Comparison of two short DNA barcoding loci (COI and COII) and two longer ribosomal DNA genes (SSU & LSU rRNA) for specimen identification among quarantine root-knot nematodes (Meloidogyne spp.) and their close relatives
- (2014) Sebastian Kiewnick et al. EUROPEAN JOURNAL OF PLANT PATHOLOGY
- The threat of root-knot nematodes (Meloidogynespp.) in Africa: a review
- (2014) E. M. Onkendi et al. PLANT PATHOLOGY
- PASTEC: An Automatic Transposable Element Classification Tool
- (2014) Claire Hoede et al. PLoS One
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Elucidating the molecular bases of epigenetic inheritance in non-model invertebrates: the case of the root-knot nematode Meloidogyne incognita
- (2014) Laetitia Perfus-Barbeoch et al. Frontiers in Physiology
- Major Emerging Problems with Minor Meloidogyne Species
- (2013) Axel A. Elling PHYTOPATHOLOGY
- First Report of Meloidogyne enterolobii on Cotton and Soybean in North Carolina, United States
- (2013) W. M. Ye et al. PLANT DISEASE
- First Report of the Root-Knot Nematode Meloidogyne enterolobii Parasitizing Watermelon from Veracruz, Mexico
- (2013) A. Ramírez-Suárez et al. PLANT DISEASE
- Resistant accessions of wildPsidiumspp. toMeloidogyne enterolobiiand histological characterization of resistance
- (2013) V. M. Freitas et al. PLANT PATHOLOGY
- Meloidogyne enterolobii (= M. mayaguensis): profile of an emerging, highly pathogenic, root-knot nematode species
- (2012) Philippe Castagnone-Sereno NEMATOLOGY
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
- (2012) Y. Wang et al. NUCLEIC ACIDS RESEARCH
- On the species status of the root-knot nematode Meloidogyne mayaguensis Rammah & Hirschmann, 1988
- (2012) Gerrit Karssen et al. ZooKeys
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- Horizontal Gene Transfer in Nematodes: A Catalyst for Plant Parasitism?
- (2011) Annelies Haegeman et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- SignalP 4.0: discriminating signal peptides from transmembrane regions
- (2011) Thomas Nordahl Petersen et al. NATURE METHODS
- The Ma Gene for Complete-Spectrum Resistance to Meloidogyne Species in Prunus Is a TNL with a Huge Repeated C-Terminal Post-LRR Region
- (2011) M. Claverie et al. PLANT PHYSIOLOGY
- Considering Transposable Element Diversification in De Novo Annotation Approaches
- (2011) Timothée Flutre et al. PLoS One
- Genetic diversity of the root-knot nematode Meloidogyne enterolobii and development of a SCAR marker for this guava-damaging species
- (2010) M. Tigano et al. PLANT PATHOLOGY
- Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes
- (2010) Etienne G. J. Danchin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences
- (2009) Hanny van Megen et al. NEMATOLOGY
- Using native and syntenically mapped cDNA alignments to improve de novo gene finding
- (2008) Mario Stanke et al. BIOINFORMATICS
- Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita
- (2008) Pierre Abad et al. NATURE BIOTECHNOLOGY
- High-throughput functional annotation and data mining with the Blast2GO suite
- (2008) S. Gotz et al. NUCLEIC ACIDS RESEARCH
- First Report of Root-Knot Nematode Meloidogyne enterolobii on Tomato and Cucumber in Switzerland
- (2008) S. Kiewnick et al. PLANT DISEASE
- Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism
- (2008) C. H. Opperman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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