Bio-organic fertilizers stimulate indigenous soil Pseudomonas populations to enhance plant disease suppression

Rhizosphere microbiome mediates systemic root metabolite exudation by root-to-root signaling

(2020) Elisa Korenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Anthranilic acid from Ralstonia solanacearum plays dual roles in intraspecies signalling and inter-kingdom communication

(2020) Shihao Song et al.   ISME Journal

Competition for iron drives phytopathogen control by natural rhizosphere microbiomes

(2020) Shaohua Gu et al.   Nature Microbiology

Microbiome Applications from Lab to Field: Facing Complexity

(2019) Angela Sessitsch et al.   TRENDS IN PLANT SCIENCE

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Ecology and Evolution of Plant Microbiomes

(2019) Viviane Cordovez et al.   Annual Review of Microbiology

Biological Control Agents Against Fusarium Wilt of Banana

(2019) Giovanni Bubici et al.   Frontiers in Microbiology

Competitive interaction with keystone taxa induced negative priming under biochar amendments

(2019) Lijun Chen et al.   Microbiome

More Than the Sum of Its Parts: Microbiome Biodiversity as a Driver of Plant Growth and Soil Health

(2019) Muhammad Saleem et al.   Annual Review of Ecology Evolution and Systematics

The Soil-Borne Legacy

(2018) Peter A.H.M. Bakker et al.   CELL

Distinct responses of soil bacterial and fungal communities to changes in fertilization regime and crop rotation

(2018) Chao Ai et al.   GEODERMA

Disease-induced assemblage of a plant-beneficial bacterial consortium

(2018) Roeland L. Berendsen et al.   ISME Journal

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

Trichoderma polysporum selectively inhibits white-nose syndrome fungal pathogen Pseudogymnoascus destructans amidst soil microbes

(2018) Amanpreet Singh et al.   Microbiome

Legacy of land use history determines reprogramming of plant physiology by soil microbiome

(2018) Xiaogang Li et al.   ISME Journal

Rhizosphere microbiome structure alters to enable wilt resistance in tomato

(2018) Min-Jung Kwak et al.   NATURE BIOTECHNOLOGY

Soil protist communities form a dynamic hub in the soil microbiome

(2017) Wu Xiong et al.   ISME Journal

Bio-fertilizer application induces soil suppressiveness against Fusarium wilt disease by reshaping the soil microbiome

(2017) Wu Xiong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Probiotic Pseudomonas communities enhance plant growth and nutrient assimilation via diversity-mediated ecosystem functioning

(2017) Jie Hu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Inducing the rhizosphere microbiome by biofertilizer application to suppress banana Fusarium wilt disease

(2017) Lin Fu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Let the Core Microbiota Be Functional

(2017) Philippe Lemanceau et al.   TRENDS IN PLANT SCIENCE

Research priorities for harnessing plant microbiomes in sustainable agriculture

(2017) Posy E. Busby et al.   PLOS BIOLOGY

Isolation of Antagonistic Endophytes from Banana Roots against Meloidogyne javanica and Their Effects on Soil Nematode Community

(2017) Lanxi Su et al.   Frontiers in Microbiology

Impact of soil heat on reassembly of bacterial communities in the rhizosphere microbiome and plant disease suppression

(2016) Menno van der Voort et al.   ECOLOGY LETTERS

Bacillus amyloliquefaciens Strain W19 can Promote Growth and Yield and Suppress Fusarium Wilt in Banana Under Greenhouse and Field Conditions

(2016) Beibei WANG et al.   PEDOSPHERE

Soil immune responses

(2016) J. M. Raaijmakers et al.   SCIENCE

Assessment of bacterial populations associated with banana tree roots and development of successful plant probiotics for banana crop

(2016) Iris-Esther Marcano et al.   SOIL BIOLOGY & BIOCHEMISTRY

An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability

(2016) S. Franz Bender et al.   TRENDS IN ECOLOGY & EVOLUTION

The Soil-Borne Supremacy

(2016) Corné M.J. Pieterse et al.   TRENDS IN PLANT SCIENCE

Probiotic Diversity Enhances Rhizosphere Microbiome Function and Plant Disease Suppression

(2016) Jie Hu et al.   mBio

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Continous application of bioorganic fertilizer induced resilient culturable bacteria community associated with banana Fusarium wilt suppression

(2016) Lin Fu et al.   Scientific Reports

Microbial and biochemical basis of a Fusarium wilt-suppressive soil

(2015) Jae-Yul Cha et al.   ISME Journal

Fungal invasion of the rhizosphere microbiome

(2015) Emilie Chapelle et al.   ISME Journal

Engineering Microbiomes to Improve Plant and Animal Health

(2015) U.G. Mueller et al.   TRENDS IN MICROBIOLOGY

Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

(2015) Zhong Wei et al.   Nature Communications

lavaan: AnRPackage for Structural Equation Modeling

(2015) Yves Rosseel   Journal of Statistical Software

Induced Systemic Resistance by Beneficial Microbes

(2014) Corné M.J. Pieterse et al.   Annual Review of Phytopathology

High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation

(2014) Dawei Ren et al.   ISME Journal

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High-Throughput Screening of Multispecies Biofilm Formation and Quantitative PCR-Based Assessment of Individual Species Proportions, Useful for Exploring Interspecific Bacterial Interactions

(2013) Dawei Ren et al.   MICROBIAL ECOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Bacillus subtilis biofilm induction by plant polysaccharides

(2013) P. B. Beauregard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Contribution of Bacillomycin D in Bacillus amyloliquefaciens SQR9 to Antifungal Activity and Biofilm Formation

(2012) Zhihui Xu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of novel bioorganic fertilizer produced by Bacillus amyloliquefaciens W19 on antagonism of Fusarium wilt of banana

(2012) Beibei Wang et al.   BIOLOGY AND FERTILITY OF SOILS

Host specificity in biological control: insights from opportunistic pathogens

(2012) Jacques Brodeur   Evolutionary Applications

Novel techniques and findings in the study of plant microbiota: Search for plant probiotics

(2012) Aleš Berlec   PLANT SCIENCE

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Pseudomonas fluorescens F113 Mutant with Enhanced Competitive Colonization Ability and Improved Biocontrol Activity against Fungal Root Pathogens

(2011) Emma Barahona et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dual transcriptional profiling of a bacterial/fungal confrontation: Collimonas fungivorans versus Aspergillus niger

(2011) Francesca Mela et al.   ISME Journal

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Identification and quantification of Fusarium oxysporum in planta and soil by means of an improved specific and quantitative PCR assay

(2010) Daniel Jiménez-Fernández et al.   APPLIED SOIL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phenazine antibiotics produced by fluorescent pseudomonads contribute to natural soil suppressiveness to Fusarium wilt

(2009) Sylvie Mazurier et al.   ISME Journal

Identifying the characteristics of organic soil amendments that suppress soilborne plant diseases

(2009) Giuliano Bonanomi et al.   SOIL BIOLOGY & BIOCHEMISTRY

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

(2008) Jos M. Raaijmakers et al.   PLANT AND SOIL