Rumen Microbiome Composition Is Altered in Sheep Divergent in Feed Efficiency

Digestive tract microbiota of beef cattle that differed in feed efficiency

(2020) Harvey C Freetly et al.   JOURNAL OF ANIMAL SCIENCE

Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data

(2020) Kyle D. Brumfield et al.   PLoS One

Changes in the Solid-, Liquid-, and Epithelium-Associated Bacterial Communities in the Rumen of Hu Lambs in Response to Dietary Urea Supplementation

(2020) Zhipeng Li et al.   Frontiers in Microbiology

Residual feed intake divergence during the preweaning period is associated with unique hindgut microbiome and metabolome profiles in neonatal Holstein heifer calves

(2020) Ahmed Elolimy et al.   Journal of Animal Science and Biotechnology

Whole rumen metagenome sequencing allows classifying and predicting feed efficiency and intake levels in cattle

(2019) Beatriz Delgado et al.   Scientific Reports

Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle

(2019) Fuyong Li et al.   Microbiome

Megasphaera elsdenii Lactate Degradation Pattern Shifts in Rumen Acidosis Models

(2019) Lianmin Chen et al.   Frontiers in Microbiology

Methane Emission, Rumen Fermentation, and Microbial Community Response to a Nitrooxy Compound in Low-Quality Forage Fed Hu Sheep

(2019) Fei Xie et al.   CURRENT MICROBIOLOGY

Prevotella copri , a potential indicator for high feed efficiency in western steers

(2019) Charles G. Brooke et al.   ANIMAL SCIENCE JOURNAL

Characterisation of the effect of day length, and associated differences in dietary intake, on the gut microbiota of Soay sheep

(2019) Nadine A. Thomas et al.   ARCHIVES OF MICROBIOLOGY

Predicting residual feed intake status using rumen microbial profiles in ewe lambs

(2019) Melinda J Ellison et al.   JOURNAL OF ANIMAL SCIENCE

Dynamic Alterations in Yak Rumen Bacteria Community and Metabolome Characteristics in Response to Feed Type

(2019) Chang Liu et al.   Frontiers in Microbiology

Comparison of the rumen bacterial community, rumen fermentation and growth performance of fattening lambs fed low-grain, pelleted or non-pelleted high grain total mixed ration

(2019) Ehab Bo Trabi et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY

Pelleted-hay alfalfa feed increases sheep wether weight gain and rumen bacterial richness over loose-hay alfalfa feed

(2019) Suzanne L. Ishaq et al.   PLoS One

How can nutrition models increase the production efficiency of sheep and goat operations?

(2019) Antonello Cannas et al.   Animal Frontiers

Advances and Challenges in Metatranscriptomic Analysis

(2019) Migun Shakya et al.   Frontiers in Genetics

Specific enrichment of microbes and increased ruminal propionate production: the potential mechanism underlying the high energy efficiency of Holstein heifers fed steam-flaked corn

(2019) Hao Ren et al.   AMB Express

Invited review: Improving feed efficiency of beef cattle – the current state of the art and future challenges

(2018) D. A. Kenny et al.   Animal

Organic acid production from potato starch waste fermentation by rumen microbial communities from Dutch and Thai dairy cows

(2018) Susakul Palakawong Na Ayudthaya et al.   Biotechnology for Biofuels

Rumen bacterial community structure impacts feed efficiency in beef cattle

(2018) Henry A Paz et al.   JOURNAL OF ANIMAL SCIENCE

Invited review: Current production trends, farm structures, and economics of the dairy sheep and goat sectors

(2018) G. Pulina et al.   JOURNAL OF DAIRY SCIENCE

The Ruminococci: key symbionts of the gut ecosystem

(2018) Alex J. La Reau et al.   JOURNAL OF MICROBIOLOGY

Effect of dietary restriction and subsequent re-alimentation on the transcriptional profile of bovine jejunal epithelium

(2018) Kate Keogh et al.   PLoS One

Persistence of Cellulolytic Bacteria Fibrobacter and Treponema After Short-Term Corn Stover-Based Dietary Intervention Reveals the Potential to Improve Rumen Fibrolytic Function

(2018) Xiao Xie et al.   Frontiers in Microbiology

Comparative Analysis of the Microbiota Between Sheep Rumen and Rabbit Cecum Provides New Insight Into Their Differential Methane Production

(2018) Lan Mi et al.   Frontiers in Microbiology

Effect of Limit-Fed Diets With Different Forage to Concentrate Ratios on Fecal Bacterial and Archaeal Community Composition in Holstein Heifers

(2018) Jun Zhang et al.   Frontiers in Microbiology

CowPI: A Rumen Microbiome Focussed Version of the PICRUSt Functional Inference Software

(2018) Toby J. Wilkinson et al.   Frontiers in Microbiology

Synergetic action between the rumen microbiota and bovine health

(2018) Mohamed Zeineldin et al.   MICROBIAL PATHOGENESIS

Effects of host genetics and environmental conditions on fecal microbiota composition of pigs

(2018) Tereza Kubasova et al.   PLoS One

16S rRNA Sequencing Reveals Relationship Between Potent Cellulolytic Genera and Feed Efficiency in the Rumen of Bulls

(2018) Emily McGovern et al.   Frontiers in Microbiology

Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection

(2018) Wei Gu et al.   Annual Review of Pathology-Mechanisms of Disease

Analysis of the Rumen Microbiome and Metabolome to Study the Effect of an Antimethanogenic Treatment Applied in Early Life of Kid Goats

(2018) Leticia Abecia et al.   Frontiers in Microbiology

Ruminal methane production: Associated microorganisms and the potential of applying hydrogen-utilizing bacteria for mitigation

(2018) Wei Lan et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Treponema ruminis sp. nov., a spirochaete isolated from the bovine rumen

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Feed efficiency phenotypes in lambs involve changes in ruminal, colonic, and small-intestine-located microbiota1

(2017) K. Perea et al.   JOURNAL OF ANIMAL SCIENCE

Shotgun metagenomics, from sampling to analysis

(2017) Christopher Quince et al.   NATURE BIOTECHNOLOGY

Diet and feed efficiency status affect rumen microbial profiles of sheep

(2017) M.J. Ellison et al.   SMALL RUMINANT RESEARCH

Illumina Sequencing Approach to Characterize Thiamine Metabolism Related Bacteria and the Impacts of Thiamine Supplementation on Ruminal Microbiota in Dairy Cows Fed High-Grain Diets

(2017) Xiaohua Pan et al.   Frontiers in Microbiology

Effect of Dietary Forage to Concentrate Ratios on Dynamic Profile Changes and Interactions of Ruminal Microbiota and Metabolites in Holstein Heifers

(2017) Jun Zhang et al.   Frontiers in Microbiology

Alterations in the Rumen Liquid-, Particle- and Epithelium-Associated Microbiota of Dairy Cows during the Transition from a Silage- and Concentrate-Based Ration to Pasture in Spring

(2017) Melanie Schären et al.   Frontiers in Microbiology

A Structural and Functional Elucidation of the Rumen Microbiome Influenced by Various Diets and Microenvironments

(2017) Simon Deusch et al.   Frontiers in Microbiology

Comparison of rumen bacteria distribution in original rumen digesta, rumen liquid and solid fractions in lactating Holstein cows

(2017) Shoukun Ji et al.   Journal of Animal Science and Biotechnology

The ruminal microbiome associated with methane emissions from ruminant livestock

(2017) Ilma Tapio et al.   Journal of Animal Science and Biotechnology

Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants

(2016) Sheerli Kruger Ben Shabat et al.   ISME Journal

Greenhouse gas mitigation potentials in the livestock sector

(2016) Mario Herrero et al.   Nature Climate Change

Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

(2016) Janine Kamke et al.   Microbiome

Ruminal Bacterial Community Composition in Dairy Cows Is Dynamic over the Course of Two Lactations and Correlates with Feed Efficiency

(2015) Kelsea A. Jewell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The rumen microbial metagenome associated with high methane production in cattle

(2015) R. John Wallace et al.   BMC GENOMICS

High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats

(2015) Jizhong Zhou et al.   mBio

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

(2015) Gemma Henderson et al.   Scientific Reports

The Role of Ciliate Protozoa in the Rumen

(2015) Charles J. Newbold et al.   Frontiers in Microbiology

High-grain feeding causes strong shifts in ruminal epithelial bacterial community and expression of Toll-like receptor genes in goats

(2015) Jun-hua Liu et al.   Frontiers in Microbiology

Microbial community profiles of the colon from steers differing in feed efficiency

(2015) Phillip R Myer et al.   SpringerPlus

Digital Dermatitis in Cattle: Current Bacterial and Immunological Findings

(2015) Jennifer Wilson-Welder et al.   Animals

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome

(2014) Weibing Shi et al.   GENOME RESEARCH

Characterization of the Core Rumen Microbiome in Cattle during Transition from Forage to Concentrate as Well as during and after an Acidotic Challenge

(2014) Renee M. Petri et al.   PLoS One

Ruminal Acidosis in Feedlot: From Aetiology to Prevention

(2014) Joaquín Hernández et al.   TheScientificWorldJOURNAL

Determining the culturability of the rumen bacterial microbiome

(2014) Christopher J. Creevey et al.   Microbial Biotechnology

Growth Performance of Lambs Fed Diet Supplemented with Rice Bran Oil as Such or as Calcium Soap

(2013) R. S. Bhatt et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

CELL BIOLOGY SYMPOSIUM: Genetics of feed efficiency in dairy and beef cattle1

(2013) D. P. Berry et al.   JOURNAL OF ANIMAL SCIENCE

Methane emissions, body composition, and rumen fermentation traits of beef heifers differing in residual feed intake1

(2013) C. Fitzsimons et al.   JOURNAL OF ANIMAL SCIENCE

Investigation of bacterial diversity in the feces of cattle fed different diets1

(2013) M. Kim et al.   JOURNAL OF ANIMAL SCIENCE

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Methanogenic Population and CH4Production in Swedish Dairy Cows Fed Different Levels of Forage

(2012) R. Danielsson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of Phenotypic Residual Feed Intake and Dietary Forage Content on the Rumen Microbial Community of Beef Cattle

(2012) Ciara A. Carberry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of rumen bacterial diversity and fermentation parameters in concentrate fed cattle with and without forage

(2012) R.M. Petri et al.   JOURNAL OF APPLIED MICROBIOLOGY

Feed efficiency and its correlations with carcass traits measured by ultrasound in Nellore bulls

(2012) M.H.A. Santana et al.   Livestock Science

Impact of subacute ruminal acidosis (SARA) adaptation and recovery on the density and diversity of bacteria in the rumen of dairy cows

(2011) Sarah E. Hook et al.   FEMS MICROBIOLOGY ECOLOGY

Carbohydrate metabolism in Bifidobacteria

(2011) Karina Pokusaeva et al.   Genes and Nutrition

Characterization of Variation in Rumen Methanogenic Communities under Different Dietary and Host Feed Efficiency Conditions, as Determined by PCR-Denaturing Gradient Gel Electrophoresis Analysis

(2010) M. Zhou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Olsenella umbonata sp. nov., a microaerotolerant anaerobic lactic acid bacterium from the sheep rumen and pig jejunum, and emended descriptions of Olsenella, Olsenella uli and Olsenella profusa

(2010) M. Kraatz et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

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(2010) P. K. Thornton   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

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Complete genome sequence of Olsenella uli type strain (VPI D76D-27CT)

(2010) Markus Göker et al.   Standards in Genomic Sciences

Pyramidobacter piscolens gen. nov., sp. nov., a member of the phylum 'Synergistetes' isolated from the human oral cavity

(2009) J. Downes et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH