Viromes of Ten Alfalfa Plants in Australia Reveal Diverse Known Viruses and a Novel RNA Virus

Identification of a novel plant RNA virus species of the genus Amalgavirus in the family Amalgaviridae from chia (Salvia hispanica)

(2019) Ji Seok Lee et al.   Genes & Genomics

A new emaravirus discovered in Pistacia from Turkey

(2019) Nihal Buzkan et al.   VIRUS RESEARCH

Detection and Characterization of Cucumis melo Cryptic Virus, Cucumis melo Amalgavirus 1, and Melon Necrotic Spot Virus in Cucumis melo

(2019) Binhui Zhan et al.   Viruses-Basel

Double-Stranded RNA High-Throughput Sequencing Reveals a New Cytorhabdovirus in a Bean Golden Mosaic Virus-Resistant Common Bean Transgenic Line

(2019) Dione M. T. Alves-Freitas et al.   Viruses-Basel

Redefining the medicago sativa alphapartitiviruses genome sequences

(2019) Nicolás Bejerman et al.   VIRUS RESEARCH

High Throughput Sequencing in Plant Virus Detection and Discovery

(2019) Dan E.V. Villamor et al.   PHYTOPATHOLOGY

Determination of the complete genome sequence of European mountain ash ringspot-associated emaravirus from Sorbus intermedia reveals two additional genome segments

(2019) Susanne von Bargen et al.   ARCHIVES OF VIROLOGY

Taxonomy of the order Bunyavirales: update 2019

(2019) Abulikemu Abudurexiti et al.   ARCHIVES OF VIROLOGY

Characterisation of a novel nucleorhabdovirus infecting alfalfa (Medicago sativa)

(2019) Yahya Z. A. Gaafar et al.   Virology Journal

First Report of Alfalfa Leaf Curl Virus Infecting Alfalfa (Medicago sativa L.) in China

(2019) Zhi-peng Guo et al.   PLANT DISEASE

Identification of emerging viral genomes in transcriptomic datasets of alfalfa (Medicago sativa L.)

(2019) Peng Jiang et al.   Virology Journal

Molecular characterization of a novel emaravrius infecting Actinidia spp. in China

(2019) Yanxiang Wang et al.   VIRUS RESEARCH

Complete genomic sequence of Raphanus sativus cryptic virus 4 (RsCV4), a novel alphapartitivirus from radish

(2018) Laurence Svanella-Dumas et al.   ARCHIVES OF VIROLOGY

Identification of novel RNA viruses in alfalfa ( Medicago sativa ): an Alphapartitivirus , a Deltapartitivirus, and a Marafivirus

(2018) Hyein Kim et al.   GENE

The impact of high throughput sequencing on plant health diagnostics

(2018) Ian P. Adams et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

ICTV Virus Taxonomy Profile: Fimoviridae

(2018) Toufic Elbeaino et al.   JOURNAL OF GENERAL VIROLOGY

Virus detection by high-throughput sequencing of small RNAs: large scale performance testing of sequence analysis strategies

(2018) Sébastien Massart et al.   PHYTOPATHOLOGY

Characterization of alfalfa virus F, a new member of the genus Marafivirus

(2018) Lev G. Nemchinov et al.   PLoS One

A 1,000-Year-Old RNA Virus

(2018) Mahtab Peyambari et al.   JOURNAL OF VIROLOGY

Small RNA-Omics for Plant Virus Identification, Virome Reconstruction, and Antiviral Defense Characterization

(2018) Mikhail M. Pooggin   Frontiers in Microbiology

Alfalfa virus S, a new species in the family Alphaflexiviridae

(2017) Lev G. Nemchinov et al.   PLoS One

Complete genome sequence of a new enamovirus from Argentina infecting alfalfa plants showing dwarfism symptoms

(2016) Nicolás Bejerman et al.   ARCHIVES OF VIROLOGY

Bean leafroll virus (BLRV) in Argentina: molecular characterization and detection in alfalfa fields

(2016) Verónica Trucco et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

A new virus discovered by immunocapture of double-stranded RNA, a rapid method for virus enrichment in metagenomic studies

(2016) Arnaud G. Blouin et al.   Molecular Ecology Resources

A +1 ribosomal frameshifting motif prevalent among plant amalgaviruses

(2016) Max L. Nibert et al.   VIROLOGY

Fast and sensitive taxonomic classification for metagenomics with Kaiju

(2016) Peter Menzel et al.   Nature Communications

Cassava brown streak virus has a rapidly evolving genome: implications for virus speciation, variability, diagnosis and host resistance

(2016) Titus Alicai et al.   Scientific Reports

Identification of Viruses and Viroids by Next-Generation Sequencing and Homology-Dependent and Homology-Independent Algorithms

(2015) Qingfa Wu et al.   Annual Review of Phytopathology

Newly identified RNAs of raspberry leaf blotch virus encoding a related group of proteins

(2015) Yuwen Lu et al.   JOURNAL OF GENERAL VIROLOGY

Comparison of Next-Generation Sequencing Versus Biological Indexing for the Optimal Detection of Viral Pathogens in Grapevine

(2015) Maher Al Rwahnih et al.   PHYTOPATHOLOGY

Plant Virus Metagenomics: Advances in Virus Discovery

(2015) Marilyn J. Roossinck et al.   PHYTOPATHOLOGY

Complete genome sequence and integrated protein localization and interaction map for alfalfa dwarf virus, which combines properties of both cytoplasmic and nuclear plant rhabdoviruses

(2015) Nicolás Bejerman et al.   VIROLOGY

Plants, viruses and the environment: Ecology and mutualism

(2015) Marilyn J. Roossinck   VIROLOGY

The evolution of emaraviruses is becoming more complex: seven segments identified in the causal agent of Rose rosette disease

(2015) Patrick L. Di Bello et al.   VIRUS RESEARCH

Viral RNA Intermediates as Targets for Detection and Discovery of Novel and Emerging Mosquito-Borne Viruses

(2015) Caitlin A. O’Brien et al.   PLoS Neglected Tropical Diseases

Appearances Can Be Deceptive: Revealing a Hidden Viral Infection with Deep Sequencing in a Plant Quarantine Context

(2014) Thierry Candresse et al.   PLoS One

Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs inArabidopsis

(2014) Mengji Cao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete nucleotide sequence of Alfalfa mosaic virus isolated from alfalfa (Medicago sativa L.) in Argentina

(2014) Verónica Trucco et al.   VIRUS GENES

How does the genome structure and lifestyle of a virus affect its population variation?

(2014) Maliheh Safari et al.   Current Opinion in Virology

Lettuce necrotic leaf curl virus, a new plant virus infecting lettuce and a proposed member of the genus Torradovirus

(2013) Martin Verbeek et al.   ARCHIVES OF VIROLOGY

Evaluation of rapid and simple techniques for the enrichment of viruses prior to metagenomic virus discovery

(2013) Richard J. Hall et al.   JOURNAL OF VIROLOGICAL METHODS

Association of a DNA Virus with Grapevines Affected by Red Blotch Disease in California

(2013) Maher Al Rwahnih et al.   PHYTOPATHOLOGY

Evidence that dicot-infecting mastreviruses are particularly prone to inter-species recombination and have likely been circulating in Australia for longer than in Africa and the Middle East

(2013) Simona Kraberger et al.   VIROLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Identification and characterization of two novel genomic RNA segments of fig mosaic virus, RNA5 and RNA6

(2012) K. Ishikawa et al.   JOURNAL OF GENERAL VIROLOGY

Use of next-generation sequencing for the identification and characterization ofMaize chlorotic mottle virusandSugarcane mosaic viruscausing maize lethal necrosis in Kenya

(2012) I. P. Adams et al.   PLANT PATHOLOGY

Molecular characterisation of dicot-infecting mastreviruses from Australia

(2012) James Hadfield et al.   VIRUS RESEARCH

Temperate pasture legumes in Australia?their history, current use, and future prospects

(2012) P. G. H. Nichols et al.   Crop & Pasture Science

Breeding lucerne for persistence

(2012) J. H. Bouton   Crop & Pasture Science

A survey of lucerne in northern New South Wales for viruses of importance to the winter legume industry

(2011) J. A. G. van Leur et al.   AUSTRALASIAN PLANT PATHOLOGY

Effective management of viruses in pulse crops in south eastern Australia should include management of weeds

(2011) Angela Joan Freeman et al.   AUSTRALASIAN PLANT PATHOLOGY

Interactive metagenomic visualization in a Web browser

(2011) Brian D Ondov et al.   BMC BIOINFORMATICS

First Report of a Rhabdovirus Infecting Alfalfa in Argentina

(2011) N. Bejerman et al.   PLANT DISEASE

Virus-derived siRNAs and piRNAs in immunity and pathogenesis

(2011) Shou-Wei Ding et al.   Current Opinion in Virology

Deep sequencing evidence from single grapevine plants reveals a virome dominated by mycoviruses

(2010) M. Al Rwahnih et al.   ARCHIVES OF VIROLOGY

Circoletto: visualizing sequence similarity with Circos

(2010) N. Darzentas   BIOINFORMATICS

RNAstructure: software for RNA secondary structure prediction and analysis

(2010) Jessica S Reuter et al.   BMC BIOINFORMATICS

Ecogenomics: using massively parallel pyrosequencing to understand virus ecology

(2010) MARILYN J. ROOSSINCK et al.   MOLECULAR ECOLOGY

Lifestyles of plant viruses

(2010) M. J. Roossinck   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard

(2010) Beatrix Coetzee et al.   VIROLOGY

Complete sequence and genetic characterization of Raspberry latent virus, a novel member of the family Reoviridae

(2010) Diego F. Quito-Avila et al.   VIRUS RESEARCH

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Next-generation sequencing and metagenomic analysis: a universal diagnostic tool in plant virology

(2009) IAN P. ADAMS et al.   MOLECULAR PLANT PATHOLOGY

Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virus

(2009) M. Al Rwahnih et al.   VIROLOGY

Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses

(2009) Jan F. Kreuze et al.   VIROLOGY

Mechanism of Induction and Suppression of Antiviral Immunity Directed by Virus-Derived Small RNAs in Drosophila

(2008) Roghiyh Aliyari et al.   Cell Host & Microbe