Intra-species differences in population size shape life history and genome evolution
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Intra-species differences in population size shape life history and genome evolution
Authors
Keywords
-
Journal
eLife
Volume 9, Issue -, Pages -
Publisher
eLife Sciences Publications, Ltd
Online
2020-09-01
DOI
10.7554/elife.55794
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Loss of genomic integrity induced by lysosphingolipid imbalance drives ageing in the heart
- (2019) Gaurav Ahuja et al. EMBO REPORTS
- Scaling up the effects of inbreeding depression from individuals to metapopulations
- (2019) Etsuko Nonaka et al. JOURNAL OF ANIMAL ECOLOGY
- Relaxed Selection Limits Lifespan by Increasing Mutation Load
- (2019) Rongfeng Cui et al. CELL
- The African turquoise killifish: A research organism to study vertebrate aging and diapause
- (2018) Chi-Kuo Hu et al. AGING CELL
- Overestimation of the adaptive substitution rate in fluctuating populations
- (2018) Marjolaine Rousselle et al. Biology Letters
- ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers
- (2018) Lauren Coombe et al. BMC BIOINFORMATICS
- Targeted deletion of the zebrafish actin-bundling protein L-plastin (lcp1)
- (2018) Margaret J. Kell et al. PLoS One
- Longitudinal demographic study of wild populations of African annual killifish
- (2018) Milan Vrtílek et al. Scientific Reports
- The Effect of Balancing Selection on Population Differentiation: A Study with HLA Genes
- (2018) Débora Y. C. Brandt et al. G3-Genes Genomes Genetics
- Genetic variation underlying local adaptation of diapause induction along a cline in a butterfly
- (2018) Peter Pruisscher et al. MOLECULAR ECOLOGY
- Novel anti-aging gene NM_026333 contributes to proton-induced aging via NCX1-pathway
- (2018) Tomohiro Osanai et al. JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY
- SLiM 3: Forward Genetic Simulations Beyond the Wright–Fisher Model
- (2018) Benjamin C Haller et al. MOLECULAR BIOLOGY AND EVOLUTION
- GenBank
- (2018) Eric W Sayers et al. NUCLEIC ACIDS RESEARCH
- Inference of Distribution of Fitness Effects and Proportion of Adaptive Substitutions from Polymorphism Data
- (2017) Paula Tataru et al. GENETICS
- Direct determination of diploid genome sequences
- (2017) Neil I. Weisenfeld et al. GENOME RESEARCH
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas
- (2017) Stephen E. Fick et al. INTERNATIONAL JOURNAL OF CLIMATOLOGY
- Ensembl 2018
- (2017) Daniel R Zerbino et al. NUCLEIC ACIDS RESEARCH
- asymptoticMK: A Web-Based Tool for the Asymptotic McDonald–Kreitman Test
- (2017) Benjamin C. Haller et al. G3-Genes Genomes Genetics
- Regulation of life span by the gut microbiota in the short-lived African turquoise killifish
- (2017) Patrick Smith et al. eLife
- Inference of Distribution of Fitness Effects and Proportion of Adaptive Substitutions from Polymorphism Data
- (2017) Paula Tataru et al. GENETICS
- The short-lived African turquoise killifish: an emerging experimental model for ageing
- (2016) Yumi Kim et al. Disease Models & Mechanisms
- Repeated intraspecific divergence in life span and aging of African annual fishes along an aridity gradient
- (2016) Radim Blažek et al. EVOLUTION
- A New Orthology Assessment Method for Phylogenomic Data: Unrooted Phylogenetic Orthology
- (2016) Jesús A. Ballesteros et al. MOLECULAR BIOLOGY AND EVOLUTION
- Population genomic evidence for adaptive differentiation in the Baltic Sea herring
- (2016) Baocheng Guo et al. MOLECULAR ECOLOGY
- PSMC analysis of effective population sizes in molecular ecology and its application to black-and-whiteFicedulaflycatchers
- (2016) Krystyna Nadachowska-Brzyska et al. MOLECULAR ECOLOGY
- Analyzing and interpreting genome data at the network level with ConsensusPathDB
- (2016) Ralf Herwig et al. Nature Protocols
- ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules
- (2016) Haim Ashkenazy et al. NUCLEIC ACIDS RESEARCH
- Age-dependent decline in fin regenerative capacity in the short-lived fishNothobranchius furzeri
- (2015) Sebastian Wendler et al. AGING CELL
- GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments
- (2015) Shunichi Kosugi et al. BIOINFORMATICS
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- The evolution of an annual life cycle in killifish: adaptation to ephemeral aquatic environments through embryonic diapause
- (2015) Andrew I. Furness BIOLOGICAL REVIEWS
- From the bush to the bench: the annualNothobranchiusfishes as a new model system in biology
- (2015) Alessandro Cellerino et al. BIOLOGICAL REVIEWS
- Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish
- (2015) Kathrin Reichwald et al. CELL
- The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan
- (2015) Dario Riccardo Valenzano et al. CELL
- Terrestrial fishes: rivers are barriers to gene flow in annual fishes from the African savanna
- (2015) Veronika Bartáková et al. JOURNAL OF BIOGEOGRAPHY
- Rapid and Inexpensive Whole-Genome Genotyping-by-Sequencing for Crossover Localization and Fine-Scale Genetic Mapping
- (2015) Beth A. Rowan et al. G3-Genes Genomes Genetics
- ALLMAPS: robust scaffold ordering based on multiple maps
- (2015) Haibao Tang et al. GENOME BIOLOGY
- LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads
- (2015) René L. Warren et al. GigaScience
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Inferring human population size and separation history from multiple genome sequences
- (2014) Stephan Schiffels et al. NATURE GENETICS
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Strong population genetic structuring in an annual fish, Nothobranchius furzeri, suggests multiple savannah refugia in southern Mozambique
- (2013) Veronika Bartáková et al. BMC EVOLUTIONARY BIOLOGY
- HIBCH mutations can cause Leigh-like disease with combined deficiency of multiple mitochondrial respiratory chain enzymes and pyruvate dehydrogenase
- (2013) Sacha Ferdinandusse et al. Orphanet Journal of Rare Diseases
- Frequent adaptation and the McDonald-Kreitman test
- (2013) P. W. Messer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- C2ORF29/CNOT11 and CNOT10 form a new module of the CCR4-NOT complex
- (2013) Fabienne Mauxion et al. RNA Biology
- Population size and the rate of evolution
- (2013) Robert Lanfear et al. TRENDS IN ECOLOGY & EVOLUTION
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Snakemake--a scalable bioinformatics workflow engine
- (2012) J. Koster et al. BIOINFORMATICS
- SNP calling by sequencing pooled samples
- (2012) Emanuele Raineri et al. BMC BIOINFORMATICS
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- Mapping of quantitative trait loci controlling lifespan in the short-lived fish Nothobranchius furzeri- a new vertebrate model for age research
- (2011) Jeanette Kirschner et al. AGING CELL
- PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
- (2011) R. Kofler et al. BIOINFORMATICS
- GRASS GIS: A multi-purpose open source GIS
- (2011) Markus Neteler et al. ENVIRONMENTAL MODELLING & SOFTWARE
- Cofilin regulator 14-3-3 is an evolutionarily conserved protein required for phagocytosis and microbial resistance
- (2011) J. Ulvila et al. JOURNAL OF LEUKOCYTE BIOLOGY
- Phylogeny, genetic variability and colour polymorphism of an emerging animal model: The short-lived annual Nothobranchius fishes from southern Mozambique
- (2011) A. Dorn et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals
- (2011) Robert Kofler et al. PLoS One
- genoPlotR: comparative gene and genome visualization in R
- (2010) L. Guy et al. BIOINFORMATICS
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Syntabulin, a motor protein linker, controls dorsal determination
- (2010) H. Nojima et al. DEVELOPMENT
- The short-lived annual fish Nothobranchius furzeri shows a typical teleost aging process reinforced by high incidence of age-dependent neoplasias
- (2010) Emiliano Di Cicco et al. EXPERIMENTAL GERONTOLOGY
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Estimation of the Neutrality Index
- (2010) N. Stoletzki et al. MOLECULAR BIOLOGY AND EVOLUTION
- High-quality draft assemblies of mammalian genomes from massively parallel sequence data
- (2010) S. Gnerre et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Mapping Loci Associated With Tail Color and Sex Determination in the Short-Lived Fish Nothobranchius furzeri
- (2009) Dario Riccardo Valenzano et al. GENETICS
- Automated identification of conserved synteny after whole-genome duplication
- (2009) J. M. Catchen et al. GENOME RESEARCH
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- High tandem repeat content in the genome of the short-lived annual fish Nothobranchius furzeri: a new vertebrate model for aging research
- (2009) Kathrin Reichwald et al. GENOME BIOLOGY
- Large Differences in Aging Phenotype between Strains of the Short-Lived Annual Fish Nothobranchius furzeri
- (2008) Eva Terzibasi et al. PLoS One
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now