Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon

Genotype-free estimation of allele frequencies reduces bias and improves demographic inference from RADSeq data

(2019) Vera M. Warmuth et al.   Molecular Ecology Resources

Genomic signatures of extensive inbreeding in Isle Royale wolves, a population on the threshold of extinction

(2019) Jacqueline A. Robinson et al.   Science Advances

Adaptive Evolution Is Common in Rapid Evolutionary Radiations

(2019) Bruno Nevado et al.   CURRENT BIOLOGY

Accumulation of Mutational Load at the Edges of a Species Range

(2018) Yvonne Willi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome

(2018) Kris A. Christensen et al.   PLoS One

On the decidability of population size histories from finite allele frequency spectra

(2018) Soheil Baharian et al.   THEORETICAL POPULATION BIOLOGY

Background selection and biased gene conversion affect more than 95% of the human genome and bias demographic inferences

(2018) Fanny Pouyet et al.   eLife

Genomic effects of population collapse in a critically endangered ironwood tree Ostrya rehderiana

(2018) Yongzhi Yang et al.   Nature Communications

Deleterious variation shapes the genomic landscape of introgression

(2018) Bernard Y. Kim et al.   PLoS Genetics

A Unified Characterization of Population Structure and Relatedness

(2017) Bruce S. Weir et al.   GENETICS

Relaxed Selection During a Recent Human Expansion

(2017) Stephan Peischl et al.   GENETICS

Accuracy of Demographic Inferences from the Site Frequency Spectrum: The Case of the Yoruba Population

(2017) Marguerite Lapierre et al.   GENETICS

Genetic Diversity and the Efficacy of Purifying Selection across Plant and Animal Species

(2017) Jun Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomics and telemetry suggest a role for migration harshness in determining overwintering habitat choice, but not gene flow, in anadromous Arctic Char

(2017) Jean-Sébastien Moore et al.   MOLECULAR ECOLOGY

Evolutionary genomics of grape (Vitis viniferassp.vinifera) domestication

(2017) Yongfeng Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Unified Characterization of Population Structure and Relatedness

(2017) Bruce S. Weir et al.   GENETICS

Relaxed Selection During a Recent Human Expansion

(2017) Stephan Peischl et al.   GENETICS

Accuracy of Demographic Inferences from the Site Frequency Spectrum: The Case of the Yoruba Population

(2017) Marguerite Lapierre et al.   GENETICS

The Empirical Distribution of Singletons for Geographic Samples of DNA Sequences

(2017) Philippe Cubry et al.   Frontiers in Genetics

Genomic Flatlining in the Endangered Island Fox

(2016) Jacqueline A. Robinson et al.   CURRENT BIOLOGY

The impact of recent population history on the deleterious mutation load in humans and close evolutionary relatives

(2016) Yuval B Simons et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes

(2016) Quentin Rougemont et al.   MOLECULAR ECOLOGY

Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations

(2016) J. M. Yáñez et al.   Molecular Ecology Resources

Hierarchical Phylogeographic Structure of Coho Salmon in California

(2016) Elizabeth A. Gilbert-Horvath et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence

(2016) Camille Roux et al.   PLOS BIOLOGY

The geography of introgression in a patchy environment and the thorn in the side of ecological speciation

(2016) Nicolas Bierne et al.   Current Zoology

The consequences of not accounting for background selection in demographic inference

(2015) Gregory B. Ewing et al.   MOLECULAR ECOLOGY

Expansion load: recessive mutations and the role of standing genetic variation

(2015) Stephan Peischl et al.   MOLECULAR ECOLOGY

Estimating the mutation load in human genomes

(2015) Brenna M. Henn et al.   NATURE REVIEWS GENETICS

Fundamental limits on the accuracy of demographic inference based on the sample frequency spectrum

(2015) Jonathan Terhorst et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distance from sub-Saharan Africa predicts mutational load in diverse human genomes

(2015) Brenna M. Henn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding

(2015) Y. Xue et al.   SCIENCE

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

The distribution of deleterious genetic variation in human populations

(2014) Kirk E Lohmueller   CURRENT OPINION IN GENETICS & DEVELOPMENT

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

The deleterious mutation load is insensitive to recent population history

(2014) Yuval B Simons et al.   NATURE GENETICS

Turnover and accumulation of genetic diversity across large time-scale cycles of isolation and connection of populations

(2014) N. Alcala et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The ecological and evolutionary implications of microrefugia

(2013) Jonathan A. Mee et al.   JOURNAL OF BIOGEOGRAPHY

On the accumulation of deleterious mutations during range expansions

(2013) S. Peischl et al.   MOLECULAR ECOLOGY

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

The Effects of Deleterious Mutations on Evolution at Linked Sites

(2012) Brian Charlesworth   GENETICS

The trouble with isolation by distance

(2012) PATRICK G. MEIRMANS   MOLECULAR ECOLOGY

Predicting the Functional Effect of Amino Acid Substitutions and Indels

(2012) Yongwook Choi et al.   PLoS One

Harnessing genomics for delineating conservation units

(2012) W. Chris Funk et al.   TRENDS IN ECOLOGY & EVOLUTION

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Pacific salmon abundance trends and climate change

(2011) J. R. Irvine et al.   ICES JOURNAL OF MARINE SCIENCE

Coho Salmon Population Structure in North America Determined from Microsatellites

(2011) Terry D. Beacham et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species

(2009) M A F Noor et al.   HEREDITY

The genetics of inbreeding depression

(2009) Deborah Charlesworth et al.   NATURE REVIEWS GENETICS

The Last Glacial Maximum

(2009) P. U. Clark et al.   SCIENCE

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

Interpreting principal component analyses of spatial population genetic variation

(2008) John Novembre et al.   NATURE GENETICS

Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation

(2008) J. Z. Li et al.   SCIENCE

Phylogeographic insights into cryptic glacial refugia

(2008) J PROVAN et al.   TRENDS IN ECOLOGY & EVOLUTION