Effects of environmental factors on microbiota of fruits and soil of Coffea arabica in Brazil

Agroecological coffee management increases arbuscular mycorrhizal fungi diversity

(2019) Paulo Prates Júnior et al.   PLoS One

The Role of Microbes in Coffee Fermentation and Their Impact on Coffee Quality

(2019) Mesfin Haile et al.   JOURNAL OF FOOD QUALITY

Following Coffee Production from Cherries to Cup: Microbiological and Metabolomic Analysis of Wet Processing of Coffea arabica

(2019) Sophia Jiyuan Zhang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SISTEMAS AGROFLORESTAIS CAFEEIRO-ARAUCÁRIA E SEU EFEITO NA MICROBIOTA DO SOLO E SEUS PROCESSOS

(2018) Rogério Melloni et al.   CIENCIA FLORESTAL

Influence of Solar Radiation and Wet Processing on the Final Quality of Arabica Coffee

(2018) Lucas Louzada Pereira et al.   JOURNAL OF FOOD QUALITY

Microbial diversity in two traditional bacterial douchi from Gansu province in northwest China using Illumina sequencing

(2018) Weibing Zhang et al.   PLoS One

Long-Term Coffee Monoculture Alters Soil Chemical Properties and Microbial Communities

(2018) Qingyun Zhao et al.   Scientific Reports

Elevation and cropping system as drivers of microclimate and abundance of soil macrofauna in coffee farmlands in mountainous ecologies

(2018) J. Karungi et al.   APPLIED SOIL ECOLOGY

FastSpar: rapid and scalable correlation estimation for compositional data

(2018) Stephen C Watts et al.   BIOINFORMATICS

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

Legitimacy and Implications of Reducing Colletotrichum kahawae to Subspecies in Plant Pathology

(2017) Dora Batista et al.   Frontiers in Plant Science

Exploring the impact of post-harvest processing on the microbiota and metabolite profiles during a case of green coffee bean production

(2016) Florac De Bruyn et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Daldionin, an Unprecedented Binaphthyl Derivative, and Diverse Polyketide Congeners from a Fungal Orchid Endophyte

(2016) Emma C. Barnes et al.   CHEMISTRY-A EUROPEAN JOURNAL

Discrimination of post-harvest coffee processing methods by microbial ecology analyses

(2016) Yasmine Hamdouche et al.   FOOD CONTROL

Potential of lactic acid bacteria to improve the fermentation and quality of coffee during on-farm processing

(2016) Gilberto Vinícius de Melo Pereira et al.   INTERNATIONAL JOURNAL OF FOOD SCIENCE AND TECHNOLOGY

Influence of growing altitude, shade and harvest period on quality and biochemical composition of Ethiopian specialty coffee

(2016) Kassaye Tolessa et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Abundance and Diversity of Bacterial, Archaeal, and Fungal Communities Along an Altitudinal Gradient in Alpine Forest Soils: What Are the Driving Factors?

(2016) José A. Siles et al.   MICROBIAL ECOLOGY

Effects of Slope Aspects on Soil Bacterial and Arbuscular Fungal Communities in a Boreal Forest in China

(2016) Haiyan CHU et al.   PEDOSPHERE

Bats perceptually weight prey cues across sensory systems when hunting in noise

(2016) D. G. E. Gomes et al.   SCIENCE

Coffee fermentation and flavor – An intricate and delicate relationship

(2015) Liang Wei Lee et al.   FOOD CHEMISTRY

Conducting starter culture-controlled fermentations of coffee beans during on-farm wet processing: Growth, metabolic analyses and sensorial effects

(2015) Gilberto Vinícius de Melo Pereira et al.   FOOD RESEARCH INTERNATIONAL

Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

(2015) Zhong Wei et al.   Nature Communications

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

(2015) William Walters et al.   mSystems

Reprint of “The mycobiota of coffee beans and its influence on the coffee beverage”

(2014) B.T. Iamanaka et al.   FOOD RESEARCH INTERNATIONAL

Data analysis for 16S microbial profiling from different benchtop sequencing platforms

(2014) Victor S. Pylro et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Endophytic microbial diversity in coffee cherries of Coffea arabica from southeastern Brazil

(2013) Marcelo N.V. Oliveira et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Improvement of coffee beverage quality by using selected yeasts strains during the fermentation in dry process

(2013) Suzana Reis Evangelista et al.   FOOD RESEARCH INTERNATIONAL

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

(2013) Johan Bengtsson-Palme et al.   Methods in Ecology and Evolution

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Determination of dynamic characteristics of microbiota in a fermented beverage produced by Brazilian Amerindians using culture-dependent and culture-independent methods

(2010) Cíntia Lacerda Ramos et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS