Warming drives ecological community changes linked to host-associated microbiome dysbiosis

Synergistic effects of warming and disease linked to high mortality in cool-adapted terrestrial frogs

(2020) Wesley J. Neely et al.   BIOLOGICAL CONSERVATION

Engineering the microbiome for animal health and conservation

(2019) Se Jin Song et al.   EXPERIMENTAL BIOLOGY AND MEDICINE

Leveraging crowdsourcing to accelerate global health solutions

(2019) Sage Davis et al.   NATURE BIOTECHNOLOGY

Arthropod–bacteria interactions influence assembly of aquatic host microbiome and pathogen defense

(2019) Sasha E. Greenspan et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Low-load pathogen spillover predicts shifts in skin microbiome and survival of a terrestrial-breeding amphibian

(2019) C. Guilherme Becker et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Low diversity gut microbiota dysbiosis: drivers, functional implications and recovery

(2018) Michael Kriss et al.   CURRENT OPINION IN MICROBIOLOGY

Both widespread PEP-CTERM proteins and exopolysaccharides are required for floc formation of Zoogloea resiniphila and other activated sludge bacteria

(2018) Na Gao et al.   ENVIRONMENTAL MICROBIOLOGY

Warming weakens facilitative interactions between decomposers and detritivores, and modifies freshwater ecosystem functioning

(2018) Tiago N. Bernabé et al.   GLOBAL CHANGE BIOLOGY

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Expanding, shifting and shrinking: The impact of global warming on species’ elevational distributions

(2018) Benjamin G. Freeman et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Environmental temperature alters the digestive performance and gut microbiota of a terrestrial amphibian

(2018) Samantha S. Fontaine et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Global predation pressure redistribution under future climate change

(2018) Gustavo Q. Romero et al.   Nature Climate Change

What drives detrital decomposition in neotropical tank bromeliads?

(2017) Céline Leroy et al.   HYDROBIOLOGIA

Temperature variation, bacterial diversity and fungal infection dynamics in the amphibian skin

(2017) Ana V. Longo et al.   MOLECULAR ECOLOGY

Land cover and forest connectivity alter the interactions among host, pathogen and skin microbiome

(2017) C. G. Becker et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Infection increases vulnerability to climate change via effects on host thermal tolerance

(2017) Sasha E. Greenspan et al.   Scientific Reports

Inhibition of Fungal Pathogens across Genotypes and Temperatures by Amphibian Skin Bacteria

(2017) Carly R. Muletz-Wolz et al.   Frontiers in Microbiology

Stress and stability: applying the Anna Karenina principle to animal microbiomes

(2017) Jesse R. Zaneveld et al.   Nature Microbiology

Climate warming reduces gut microbiota diversity in a vertebrate ectotherm

(2017) Elvire Bestion et al.   Nature Ecology & Evolution

The amphibian microbiome: natural range of variation, pathogenic dysbiosis, and role in conservation

(2016) Randall R. Jiménez et al.   BIODIVERSITY AND CONSERVATION

Jumping into a trap: high prevalence of chytrid fungus in the preferred microhabitats of a bromeliad-specialist frog

(2016) G Ruano-Fajardo et al.   DISEASES OF AQUATIC ORGANISMS

Effects of environmental temperature on the gut microbial communities of tadpoles

(2016) Kevin D. Kohl et al.   ENVIRONMENTAL MICROBIOLOGY

Effects of temperature variability on community structure in a natural microbial food web

(2016) Axel Zander et al.   GLOBAL CHANGE BIOLOGY

Environmental fluctuations and host skin bacteria shift survival advantage between frogs and their fungal pathogen

(2016) Ana V Longo et al.   ISME Journal

Temperature variability and moisture synergistically interact to exacerbate an epizootic disease

(2015) T. R. Raffel et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

piecewiseSEM: Piecewise structural equation modelling inr for ecology, evolution, and systematics

(2015) Jonathan S. Lefcheck   Methods in Ecology and Evolution

Seasonal and ontogenetic variation of skin microbial communities and relationships to natural disease dynamics in declining amphibians

(2015) Ana V. Longo et al.   Royal Society Open Science

Mechanisms underpinning climatic impacts on natural populations: altered species interactions are more important than direct effects

(2014) Nancy Ockendon et al.   GLOBAL CHANGE BIOLOGY

Effects of Warming and Nutrient Enrichment on How Grazing Pressure Affects Leaf Litter–Colonizing Bacteria

(2014) Fatemeh Sanaei Moghadam et al.   JOURNAL OF ENVIRONMENTAL QUALITY

Interacting Symbionts and Immunity in the Amphibian Skin Mucosome Predict Disease Risk and Probiotic Effectiveness

(2014) Douglas C. Woodhams et al.   PLoS One

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Food-Web Structure in Relation to Environmental Gradients and Predator-Prey Ratios in Tank-Bromeliad Ecosystems

(2013) Olivier Dézerald et al.   PLoS One

Larval Diet in Bromeliad Pools: A Case Study of Tadpoles of Two Species in the Genus Scinax (Hylidae)

(2012) Leandro T. Sabagh et al.   COPEIA

Changes in cutaneous microbial abundance with sloughing: possible implications for infection and disease in amphibians

(2012) EA Meyer et al.   DISEASES OF AQUATIC ORGANISMS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

How does climate change cause extinction?

(2012) A. E. Cahill et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Disease and thermal acclimation in a more variable and unpredictable climate

(2012) Thomas R. Raffel et al.   Nature Climate Change

Community assembly: alternative stable states or alternative transient states?

(2011) Tadashi Fukami et al.   ECOLOGY LETTERS

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Experimentally Simulated Global Warming and Nitrogen Enrichment Effects on Microbial Litter Decomposers in a Marsh

(2010) Sabine Flury et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Turning up the heat: Temperature influences the relative importance of top-down and bottom-up effects

(2010) David Hoekman   ECOLOGY

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

From Structure to Function: the Ecology of Host-Associated Microbial Communities

(2010) C. J. Robinson et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Global Factors Driving Emerging Infectious Diseases

(2009) A. Alonso Aguirre et al.   Annals of the New York Academy of Sciences