Arthropod–bacteria interactions influence assembly of aquatic host microbiome and pathogen defense

Engineering the microbiome for animal health and conservation

(2019) Se Jin Song et al.   EXPERIMENTAL BIOLOGY AND MEDICINE

Low diversity gut microbiota dysbiosis: drivers, functional implications and recovery

(2018) Michael Kriss et al.   CURRENT OPINION IN MICROBIOLOGY

Warming weakens facilitative interactions between decomposers and detritivores, and modifies freshwater ecosystem functioning

(2018) Tiago N. Bernabé et al.   GLOBAL CHANGE BIOLOGY

Introduction: The host-associated microbiome: Pattern, process and function

(2018) Laura Wegener Parfrey et al.   MOLECULAR ECOLOGY

Amphibian chytridiomycosis outbreak dynamics are linked with host skin bacterial community structure

(2018) Kieran A. Bates et al.   Nature Communications

Host and Aquatic Environment Shape the Amphibian Skin Microbiome but Effects on Downstream Resistance to the Pathogen Batrachochytrium dendrobatidis Are Variable

(2018) Andrea J. Jani et al.   Frontiers in Microbiology

Development and worldwide use of non-lethal, and minimal population-level impact, protocols for the isolation of amphibian chytrid fungi

(2018) Matthew C. Fisher et al.   Scientific Reports

What drives detrital decomposition in neotropical tank bromeliads?

(2017) Céline Leroy et al.   HYDROBIOLOGIA

Greater Species Richness of Bacterial Skin Symbionts Better Suppresses the Amphibian Fungal Pathogen Batrachochytrium Dendrobatidis

(2017) Jonah Piovia-Scott et al.   MICROBIAL ECOLOGY

Host niche may determine disease-driven extinction risk

(2017) Mark Blooi et al.   PLoS One

Epidemic and endemic pathogen dynamics correspond to distinct host population microbiomes at a landscape scale

(2017) Andrea J. Jani et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Land cover and forest connectivity alter the interactions among host, pathogen and skin microbiome

(2017) C. G. Becker et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Stress and stability: applying the Anna Karenina principle to animal microbiomes

(2017) Jesse R. Zaneveld et al.   Nature Microbiology

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

(2017) Amnon Amir et al.   mSystems

Low resistance to chytridiomycosis in direct-developing amphibians

(2017) Andréa F. C. Mesquita et al.   Scientific Reports

Jumping into a trap: high prevalence of chytrid fungus in the preferred microhabitats of a bromeliad-specialist frog

(2016) G Ruano-Fajardo et al.   DISEASES OF AQUATIC ORGANISMS

Food web structure shaped by habitat size and climate across a latitudinal gradient

(2016) Gustavo Q. Romero et al.   ECOLOGY

Skin bacterial diversity of Panamanian frogs is associated with host susceptibility and presence of Batrachochytrium dendrobatidis

(2016) Eria A Rebollar et al.   ISME Journal

Gut bacterial communities across tadpole ecomorphs in two diverse tropical anuran faunas

(2016) Miguel Vences et al.   NATURWISSENSCHAFTEN

Probiotic treatment restores protection against lethal fungal infection lost during amphibian captivity

(2016) Jordan G. Kueneman et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Amphibian gut microbiota shifts differentially in community structure but converges on habitat-specific predicted functions

(2016) Molly C. Bletz et al.   Nature Communications

Gut bacterial communities across tadpole ecomorphs in two diverse tropical anuran faunas

(2016) Miguel Vences et al.   Science of Nature

High taxonomic variability despite stable functional structure across microbial communities

(2016) Stilianos Louca et al.   Nature Ecology & Evolution

Antifungal isolates database of amphibian skin-associated bacteria and function against emerging fungal pathogens

(2015) Douglas C. Woodhams et al.   ECOLOGY

Phylogenetic distribution of symbiotic bacteria from Panamanian amphibians that inhibit growth of the lethal fungal pathogenBatrachochytrium dendrobatidis

(2015) Matthew H. Becker et al.   MOLECULAR ECOLOGY

Defining dysbiosis and its influence on host immunity and disease

(2014) Charisse Petersen et al.   CELLULAR MICROBIOLOGY

Microscopic Aquatic Predators Strongly Affect Infection Dynamics of a Globally Emerged Pathogen

(2014) Dirk S. Schmeller et al.   CURRENT BIOLOGY

Variation in gut microbial communities and its association with pathogen infection in wild bumble bees (Bombus)

(2014) Daniel P Cariveau et al.   ISME Journal

Interacting Symbionts and Immunity in the Amphibian Skin Mucosome Predict Disease Risk and Probiotic Effectiveness

(2014) Douglas C. Woodhams et al.   PLoS One

The pathogenBatrachochytrium dendrobatidisdisturbs the frog skin microbiome during a natural epidemic and experimental infection

(2014) Andrea J. Jani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interactions between amphibians' symbiotic bacteria cause the production of emergent anti-fungal metabolites

(2014) Andrew H. Loudon et al.   Frontiers in Microbiology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mitigating amphibian chytridiomycosis with bioaugmentation: characteristics of effective probiotics and strategies for their selection and use

(2013) Molly C. Bletz et al.   ECOLOGY LETTERS

Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus)

(2013) Andrew H Loudon et al.   ISME Journal

The amphibian skin-associated microbiome across species, space and life history stages

(2013) Jordan G. Kueneman et al.   MOLECULAR ECOLOGY

Food-Web Structure in Relation to Environmental Gradients and Predator-Prey Ratios in Tank-Bromeliad Ecosystems

(2013) Olivier Dézerald et al.   PLoS One

From Animalcules to an Ecosystem: Application of Ecological Concepts to the Human Microbiome

(2012) Noah Fierer et al.   Annual Review of Ecology Evolution and Systematics

Invertebrates, ecosystem services and climate change

(2012) Chelse M. Prather et al.   BIOLOGICAL REVIEWS

The choice of bromeliads as a microhabitat by Scinax argyreornatus (Anura, Hylidae)

(2012) J. Pederassi et al.   BRAZILIAN JOURNAL OF BIOLOGY

Host invasion by Batrachochytrium dendrobatidis: fungal and epidermal ultrastructure in model anurans

(2012) SE Greenspan et al.   DISEASES OF AQUATIC ORGANISMS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Diet-Induced Dysbiosis of the Intestinal Microbiota and the Effects on Immunity and Disease

(2012) Kirsty Brown et al.   Nutrients

Invertebrate footprints on detritus processing, bacterial community structure, and spatiotemporal redox profiles

(2012) Ellard R Hunting et al.   Freshwater Science

Mitigating amphibian disease: strategies to maintain wild populations and control chytridiomycosis

(2011) Douglas C Woodhams et al.   Frontiers in Zoology

The skin microbiome

(2011) Elizabeth A. Grice et al.   NATURE REVIEWS MICROBIOLOGY

Socially transmitted gut microbiota protect bumble bees against an intestinal parasite

(2011) H. Koch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

From Structure to Function: the Ecology of Host-Associated Microbial Communities

(2010) C. J. Robinson et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Enzootic and epizootic dynamics of the chytrid fungal pathogen of amphibians

(2010) C. J. Briggs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus

(2009) Reid N Harris et al.   ISME Journal

Life history tradeoffs influence mortality associated with the amphibian pathogenBatrachochytrium dendrobatidis

(2009) Trenton W. J. Garner et al.   OIKOS

A review on the interactions between gut microbiota and innate immunity of fish: Table 1

(2008) Geovanny D. Gómez et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Microbial Ecology of Ocean Biogeochemistry: A Community Perspective

(2008) S. L. Strom   SCIENCE