Stress-induced RNA–chromatin interactions promote endothelial dysfunction

Suppression of Endothelial AGO1 Promotes Adipose Tissue Browning and Improves Metabolic Dysfunction

(2020) Xiaofang Tang et al.   CIRCULATION

Endothelial to Mesenchymal Transition in Cardiovascular Disease

(2019) Jason C. Kovacic et al.   JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY

Genome-wide colocalization of RNA–DNA interactions and fusion RNA pairs

(2019) Zhangming Yan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetics and epigenomics in diabetic kidney disease and metabolic memory

(2019) Mitsuo Kato et al.   Nature Reviews Nephrology

Chromatin-associated RNAs as facilitators of functional genomic interactions

(2019) Xiao Li et al.   NATURE REVIEWS GENETICS

Mapping RNA–chromatin interactions by sequencing with iMARGI

(2019) Weixin Wu et al.   Nature Protocols

Plasminogen Activator Inhibitor-1 Promotes Neutrophil Infiltration and Tissue Injury on Ischemia–ReperfusionHighlights

(2018) Marc Praetner et al.   ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

A Metabolic Basis for Endothelial-to-Mesenchymal Transition

(2018) Jianhua Xiong et al.   MOLECULAR CELL

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Bias, robustness and scalability in single-cell differential expression analysis

(2018) Charlotte Soneson et al.   NATURE METHODS

A unifying concept in vascular health and disease

(2018) Martin A. Schwartz et al.   SCIENCE

Dissecting super-enhancer hierarchy based on chromatin interactions

(2018) Jialiang Huang et al.   Nature Communications

Enhancer-associated long non-coding RNA LEENE regulates endothelial nitric oxide synthase and endothelial function

(2018) Yifei Miao et al.   Nature Communications

Chromatin-associated RNA sequencing (ChAR-seq) maps genome-wide RNA-to-DNA contacts

(2018) Jason C Bell et al.   eLife

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(2018) Tri C. Nguyen et al.   TRENDS IN GENETICS

GITAR: An Open Source Tool for Analysis and Visualization of Hi-C Data

(2018) Riccardo Calandrelli et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

GRID-seq reveals the global RNA–chromatin interactome

(2017) Xiao Li et al.   NATURE BIOTECHNOLOGY

The molecular basis of endothelial cell plasticity

(2017) Elisabetta Dejana et al.   Nature Communications

Predicting the errors of predicted local backbone angles and non-local solvent- accessibilities of proteins by deep neural networks

(2016) Jianzhao Gao et al.   BIOINFORMATICS

Enhancers as non-coding RNA transcription units: recent insights and future perspectives

(2016) Wenbo Li et al.   NATURE REVIEWS GENETICS

Integrative analysis of 111 reference human epigenomes

(2015) Anshul Kundaje et al.   NATURE

dbSUPER: a database of super-enhancers in mouse and human genome

(2015) Aziz Khan et al.   NUCLEIC ACIDS RESEARCH

Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data

(2014) Wenyuan Li et al.   BIOINFORMATICS

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

(2014) Suhas S.P. Rao et al.   CELL

Epigenetic mechanisms in diabetic complications and metabolic memory

(2014) Marpadga A. Reddy et al.   DIABETOLOGIA

NF-κB Directs Dynamic Super Enhancer Formation in Inflammation and Atherogenesis

(2014) Jonathan D. Brown et al.   MOLECULAR CELL

Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre

(2014) Ezgi Hacisuleyman et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

TGF-  Signaling Mediates Endothelial-to-Mesenchymal Transition (EndMT) During Vein Graft Remodeling

(2014) B. C. Cooley et al.   Science Translational Medicine

Loss of Function in Heparan Sulfate Elongation Genes EXT1 and EXT 2 Results in Improved Nitric Oxide Bioavailability and Endothelial Function

(2014) H. L. Mooij et al.   Journal of the American Heart Association

Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation

(2013) Wenbo Li et al.   NATURE

Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data

(2013) Job Dekker et al.   NATURE REVIEWS GENETICS

The Rho-GEF Trio regulates a novel pro-inflammatory pathway through the transcription factor Ets2

(2013) J. Van Rijssel et al.   Biology Open

Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome

(2012) Tom Sexton et al.   CELL

PAI-1 and Diabetes: A Journey From the Bench to the Bedside

(2012) D. J. Schneider et al.   DIABETES CARE

Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

The fractal globule as a model of chromatin architecture in the cell

(2011) Leonid A. Mirny   CHROMOSOME RESEARCH

Endothelial Dysfunction in Diabetes: The role of reparatory mechanisms

(2011) A. Avogaro et al.   DIABETES CARE

PAI-1 in tissue fibrosis

(2011) Asish K. Ghosh et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Thrombospondin-1: Multiple Paths to Inflammation

(2011) Zenaida Lopez-Dee et al.   MEDIATORS OF INFLAMMATION

REVIEW: Plasminogen Activator Inhibitor-1 (PAI-1): A Key Factor Linking Fibrinolysis and Age-Related Subclinical and Clinical Conditions

(2010) Matteo Cesari et al.   Cardiovascular Therapeutics

TGF-β and fibrosis in different organs — molecular pathway imprints

(2009) Dirk Pohlers et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Von Willebrand Factor, Type 2 Diabetes Mellitus, and Risk of Cardiovascular Disease

(2008) David S. Frankel et al.   CIRCULATION

PAI1 stimulates assembly of the fibronectin matrix in osteosarcoma cells through crosstalk between the  v 5 and  5 1 integrins

(2008) D. Vial et al.   JOURNAL OF CELL SCIENCE

Transient high glucose causes persistent epigenetic changes and altered gene expression during subsequent normoglycemia

(2008) Assam El-Osta et al.   JOURNAL OF EXPERIMENTAL MEDICINE

A PAI-1 Mutant, PAI-1R, Slows Progression of Diabetic Nephropathy

(2008) Y. Huang et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY