Chromatin-associated RNA sequencing (ChAR-seq) maps genome-wide RNA-to-DNA contacts
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Chromatin-associated RNA sequencing (ChAR-seq) maps genome-wide RNA-to-DNA contacts
Authors
Keywords
-
Journal
eLife
Volume 7, Issue -, Pages -
Publisher
eLife Sciences Organisation, Ltd.
Online
2018-04-12
DOI
10.7554/elife.27024
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- GRID-seq reveals the global RNA–chromatin interactome
- (2017) Xiao Li et al. NATURE BIOTECHNOLOGY
- CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation
- (2016) Matthias Merkenschlager et al. Annual Review of Genomics and Human Genetics
- 7SK-BAF axis controls pervasive transcription at enhancers
- (2016) Ryan A Flynn et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The non-coding RNA composition of the mitotic chromosome by 5′-tag sequencing
- (2016) Yicong Meng et al. NUCLEIC ACIDS RESEARCH
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- 7SK-BAF axis controls pervasive transcription at enhancers
- (2016) Ryan A Flynn et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Modulation of Chromatin by Noncoding RNA
- (2015) Victoria H. Meller et al. Annual Review of Genetics
- Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains
- (2015) Sergey V. Ulianov et al. GENOME RESEARCH
- High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila
- (2015) Fidel Ramírez et al. MOLECULAR CELL
- Transcription factor trapping by RNA in gene regulatory elements
- (2015) A. A. Sigova et al. SCIENCE
- Dosage Compensation inDrosophila
- (2015) John C. Lucchesi et al. Cold Spring Harbor Perspectives in Biology
- Nuclear Fractionation Reveals Thousands of Chromatin-Tethered Noncoding RNAs Adjacent to Active Genes
- (2015) Michael S. Werner et al. Cell Reports
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones
- (2014) Thomas R. Cech et al. CELL
- Genome-scale functional characterization of Drosophila developmental enhancers in vivo
- (2014) Evgeny Z. Kvon et al. NATURE
- Revealing long noncoding RNA architecture and functions using domain-specific chromatin isolation by RNA purification
- (2014) Jeffrey J Quinn et al. NATURE BIOTECHNOLOGY
- Control of Transcriptional Elongation
- (2013) Hojoong Kwak et al. Annual Review of Genetics
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing
- (2013) H. Kwak et al. SCIENCE
- The Xist lncRNA Exploits Three-Dimensional Genome Architecture to Spread Across the X Chromosome
- (2013) J. M. Engreitz et al. SCIENCE
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Pericentric and centromeric transcription: a perfect balance required
- (2012) Laura E. Hall et al. CHROMOSOME RESEARCH
- Df31 Protein and snoRNAs Maintain Accessible Higher-Order Structures of Chromatin
- (2012) Thomas Schubert et al. MOLECULAR CELL
- Gene Density, Transcription, and Insulators Contribute to the Partition of the Drosophila Genome into Physical Domains
- (2012) Chunhui Hou et al. MOLECULAR CELL
- Modular regulatory principles of large non-coding RNAs
- (2012) Mitchell Guttman et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Dosage compensation in Drosophila melanogaster: epigenetic fine-tuning of chromosome-wide transcription
- (2012) Thomas Conrad et al. NATURE REVIEWS GENETICS
- T4 RNA Ligase 2 truncated active site mutants: improved tools for RNA analysis
- (2011) Sebastien Viollet et al. BMC BIOTECHNOLOGY
- Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions
- (2011) Ci Chu et al. MOLECULAR CELL
- A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
- (2011) Kevin C. Wang et al. NATURE
- Regulation of X-chromosome inactivation by the X-inactivation centre
- (2011) Sandrine Augui et al. NATURE REVIEWS GENETICS
- The genomic binding sites of a noncoding RNA
- (2011) M. D. Simon et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- 53BP1 Inhibits Homologous Recombination in Brca1-Deficient Cells by Blocking Resection of DNA Breaks
- (2010) Samuel F. Bunting et al. CELL
- The transcriptional diversity of 25 Drosophila cell lines
- (2010) L. Cherbas et al. GENOME RESEARCH
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
- (2010) et al. SCIENCE
- Spliceosome Structure and Function
- (2010) C. L. Will et al. Cold Spring Harbor Perspectives in Biology
- Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.
- (2010) Nynke L. van Berkum et al. Jove-Journal of Visualized Experiments
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- “Cotranscriptionality”: The Transcription Elongation Complex as a Nexus for Nuclear Transactions
- (2009) Roberto Perales et al. MOLECULAR CELL
- Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
- (2009) Ahmad M. Khalil et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- 7SK snRNP/P-TEFb couples transcription elongation with alternative splicing and is essential for vertebrate development
- (2009) M. Barboric et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transcription-Coupled Methylation of Histone H3 at Lysine 36 Regulates Dosage Compensation by Enhancing Recruitment of the MSL Complex in Drosophila melanogaster
- (2008) O. Bell et al. MOLECULAR AND CELLULAR BIOLOGY
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now