Atribacteria Reproducing over Millions of Years in the Atlantic Abyssal Subseafloor
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Title
Atribacteria Reproducing over Millions of Years in the Atlantic Abyssal Subseafloor
Authors
Keywords
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Journal
mBio
Volume 11, Issue 5, Pages -
Publisher
American Society for Microbiology
Online
2020-10-05
DOI
10.1128/mbio.01937-20
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Related references
Note: Only part of the references are listed.- Physiological limits to life in anoxic subseafloor sediment
- (2020) William D Orsi et al. FEMS MICROBIOLOGY REVIEWS
- Metabolic strategies of marine subseafloor Chloroflexi inferred from genome reconstructions
- (2020) Maeva Fincker et al. ENVIRONMENTAL MICROBIOLOGY
- Anaerobic metabolism of Foraminifera thriving below the seafloor
- (2020) William D. Orsi et al. ISME Journal
- Persistent organic matter in oxic subseafloor sediment
- (2019) Emily R. Estes et al. Nature Geoscience
- SqueezeMeta, A Highly Portable, Fully Automatic Metagenomic Analysis Pipeline
- (2019) Javier Tamames et al. Frontiers in Microbiology
- Quantifying population-specific growth in benthic bacterial communities under low oxygen using H218O
- (2019) Ömer K. Coskun et al. ISME Journal
- Uncultured Microbial Phyla Suggest Mechanisms for Multi-Thousand-Year Subsistence in Baltic Sea Sediments
- (2019) Jordan T. Bird et al. mBio
- The Biogeochemical Sulfur Cycle of Marine Sediments
- (2019) Bo Barker Jørgensen et al. Frontiers in Microbiology
- Microbial Selection and Survival in Subseafloor Sediment
- (2019) John B. Kirkpatrick et al. Frontiers in Microbiology
- Anaerobic hydrocarbon degradation in candidate phylum ‘Atribacteria’ (JS1) inferred from genomics
- (2019) Yi-Fan Liu et al. ISME Journal
- Nitrifier abundance and diversity peak at deep redox transition zones
- (2019) Rui Zhao et al. Scientific Reports
- Archaea dominate oxic subseafloor communities over multimillion-year time scales
- (2019) Aurèle Vuillemin et al. Science Advances
- Subseafloor life and its biogeochemical impacts
- (2019) Steven D’Hondt et al. Nature Communications
- Metabolic activity analyses demonstrate that Lokiarchaeon exhibits homoacetogenesis in sulfidic marine sediments
- (2019) William D. Orsi et al. Nature Microbiology
- Ecology and evolution of seafloor and subseafloor microbial communities
- (2018) William D. Orsi NATURE REVIEWS MICROBIOLOGY
- D:L-Amino Acid Modeling Reveals Fast Microbial Turnover of Days to Months in the Subsurface Hydrothermal Sediment of Guaymas Basin
- (2018) Mikkel H. Møller et al. Frontiers in Microbiology
- A 16S rRNA gene sequencing and analysis protocol for the Illumina MiniSeq platform
- (2018) Monica Pichler et al. MicrobiologyOpen
- Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
- (2018) Christian M. K. Sieber et al. Nature Microbiology
- Effects of organic matter and low oxygen on the mycobenthos in a coastal lagoon
- (2018) Ana‐Sofia Ortega‐Arbulú et al. ENVIRONMENTAL MICROBIOLOGY
- eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
- (2018) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- Genomic Insight Into the Predominance of Candidate Phylum Atribacteria JS1 Lineage in Marine Sediments
- (2018) Yung Mi Lee et al. Frontiers in Microbiology
- Microbial community assembly and evolution in subseafloor sediment
- (2017) Piotr Starnawski et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Methyl-compound use and slow growth characterize microbial life in 2-km-deep subseafloor coal and shale beds
- (2017) Elizabeth Trembath-Reichert et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Homoacetogenesis in Deep-Sea Chloroflexi , as Inferred by Single-Cell Genomics, Provides a Link to Reductive Dehalogenation in Terrestrial Dehalococcoidetes
- (2017) Holly L. Sewell et al. mBio
- Predicted microbial secretomes and their target substrates in marine sediment
- (2017) William D. Orsi et al. Nature Microbiology
- Microbial turnover times in the deep seabed studied by amino acid racemization modelling
- (2017) Stefan Braun et al. Scientific Reports
- Energetics and Application of Heterotrophy in Acetogenic Bacteria
- (2016) Kai Schuchmann et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
- (2016) Karthik Anantharaman et al. Nature Communications
- MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
- (2015) Yu-Wei Wu et al. BIOINFORMATICS
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling
- (2015) Cindy J. Castelle et al. CURRENT BIOLOGY
- Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
- (2015) Alma E. Parada et al. ENVIRONMENTAL MICROBIOLOGY
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Phylogeny and physiology of candidate phylum ‘Atribacteria’ (OP9/JS1) inferred from cultivation-independent genomics
- (2015) Masaru K Nobu et al. ISME Journal
- Unusual biology across a group comprising more than 15% of domain Bacteria
- (2015) Christopher T. Brown et al. NATURE
- Complex archaea that bridge the gap between prokaryotes and eukaryotes
- (2015) Anja Spang et al. NATURE
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- (2015) Steven D’Hondt et al. Nature Geoscience
- Orchestrating high-throughput genomic analysis with Bioconductor
- (2015) Wolfgang Huber et al. NATURE METHODS
- Exploring deep microbial life in coal-bearing sediment down to 2.5 km below the ocean floor
- (2015) F. Inagaki et al. SCIENCE
- Bacterial microcompartments and the modular construction of microbial metabolism
- (2015) Cheryl A. Kerfeld et al. TRENDS IN MICROBIOLOGY
- Anvi’o: an advanced analysis and visualization platform for ‘omics data
- (2015) A. Murat Eren et al. PeerJ
- MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
- (2015) Dongwan D. Kang et al. PeerJ
- Biochemical fossils of the ancient transition from geoenergetics to bioenergetics in prokaryotic one carbon compound metabolism
- (2014) Filipa L. Sousa et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
- (2014) Susannah J Salter et al. BMC BIOLOGY
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Expanded microbial genome coverage and improved protein family annotation in the COG database
- (2014) Michael Y. Galperin et al. NUCLEIC ACIDS RESEARCH
- Incomplete Wood-Ljungdahl pathway facilitates one-carbon metabolism in organohalide-respiring Dehalococcoides mccartyi
- (2014) W.-Q. Zhuang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bacterial formate hydrogenlyase complex
- (2014) J. S. McDowall et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global rates of marine sulfate reduction and implications for sub-sea-floor metabolic activities
- (2014) M. W. Bowles et al. SCIENCE
- The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
- (2014) Patrick J. Keeling et al. PLOS BIOLOGY
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- (2014) Seth D. Axen et al. PLoS Computational Biology
- Meta-Analysis of Quantification Methods Shows that Archaea and Bacteria Have Similar Abundances in the Subseafloor
- (2013) Karen G. Lloyd et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Microbial community analysis of deeply buried marine sediments of the New Jersey shallow shelf (IODP Expedition 313)
- (2013) Anja Breuker et al. FEMS MICROBIOLOGY ECOLOGY
- The Ferredoxin:NAD+Oxidoreductase (Rnf) from the AcetogenAcetobacterium woodiiRequires Na+and Is Reversibly Coupled to the Membrane Potential
- (2013) Verena Hess et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Insights into the phylogeny and coding potential of microbial dark matter
- (2013) Christian Rinke et al. NATURE
- The bacterial cell division proteins FtsA and FtsZ self-organize into dynamic cytoskeletal patterns
- (2013) Martin Loose et al. NATURE CELL BIOLOGY
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- Microbial life under extreme energy limitation
- (2013) Tori M. Hoehler et al. NATURE REVIEWS MICROBIOLOGY
- The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses
- (2013) Tomáš Větrovský et al. PLoS One
- Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage
- (2013) Jeremy A. Dodsworth et al. Nature Communications
- Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2
- (2012) Martin Wu et al. BIOINFORMATICS
- Interstitial fluid chemistry of sediments underlying the North Atlantic gyre and the influence of subsurface fluid flow
- (2012) Wiebke Ziebis et al. EARTH AND PLANETARY SCIENCE LETTERS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Global distribution of microbial abundance and biomass in subseafloor sediment
- (2012) J. Kallmeyer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Quantification of microbial communities in subsurface marine sediments of the Black Sea and off Namibia
- (2012) Axel Schippers Frontiers in Microbiology
- Degradation of natural organic matter: A thermodynamic analysis
- (2011) Douglas E. LaRowe et al. GEOCHIMICA ET COSMOCHIMICA ACTA
- Carbon and nitrogen assimilation in deep subseafloor microbial cells
- (2011) Y. Morono et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- FtsZ in Bacterial Cytokinesis: Cytoskeleton and Force Generator All in One
- (2010) H. P. Erickson et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- FragGeneScan: predicting genes in short and error-prone reads
- (2010) Mina Rho et al. NUCLEIC ACIDS RESEARCH
- Subseafloor sedimentary life in the South Pacific Gyre
- (2009) Steven D'Hondt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The RAST Server: Rapid Annotations using Subsystems Technology
- (2008) Ramy K Aziz et al. BMC GENOMICS
- Prokaryotic biodiversity and activity in the deep subseafloor biosphere
- (2008) John C. Fry et al. FEMS MICROBIOLOGY ECOLOGY
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