Metabolic activity analyses demonstrate that Lokiarchaeon exhibits homoacetogenesis in sulfidic marine sediments

Asgard archaea capable of anaerobic hydrocarbon cycling

(2019) Kiley W. Seitz et al.   Nature Communications

Proposal of the reverse flow model for the origin of the eukaryotic cell based on comparative analyses of Asgard archaeal metabolism

(2019) Anja Spang et al.   Nature Microbiology

Archaea dominate oxic subseafloor communities over multimillion-year time scales

(2019) Aurèle Vuillemin et al.   Science Advances

Flavin-Based Electron Bifurcation, A New Mechanism of Biological Energy Coupling

(2018) Wolfgang Buckel et al.   CHEMICAL REVIEWS

Identifying metabolic pathways for production of extracellular polymeric substances by the diatom Fragilariopsis cylindrus inhabiting sea ice

(2018) Shazia N. Aslam et al.   ISME Journal

HTSSIP: An R package for analysis of high throughput sequencing data from nucleic acid stable isotope probing (SIP) experiments

(2018) Nicholas D. Youngblut et al.   PLoS One

Growth of sedimentaryBathyarchaeotaon lignin as an energy source

(2018) Tiantian Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linking Uncultivated Microbial Populations and Benthic Carbon Turnover by Using Quantitative Stable Isotope Probing

(2018) Ömer K. Coskun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Expansive microbial metabolic versatility and biodiversity in dynamic Guaymas Basin hydrothermal sediments

(2018) Nina Dombrowski et al.   Nature Communications

The Physiology of Phagocytosis in the Context of Mitochondrial Origin

(2017) William F. Martin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Asgard archaea illuminate the origin of eukaryotic cellular complexity

(2017) Katarzyna Zaremba-Niedzwiedzka et al.   NATURE

Archaea and the origin of eukaryotes

(2017) Laura Eme et al.   NATURE REVIEWS MICROBIOLOGY

Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life

(2017) Anja Spang et al.   SCIENCE

Predicted microbial secretomes and their target substrates in marine sediment

(2017) William D. Orsi et al.   Nature Microbiology

Energetics and Application of Heterotrophy in Acetogenic Bacteria

(2016) Kai Schuchmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Energy for two: New archaeal lineages and the origin of mitochondria

(2016) William F. Martin et al.   BIOESSAYS

Genomic evidence for distinct carbon substrate preferences and ecological niches of Bathyarchaeota in estuarine sediments

(2016) Cassandre Sara Lazar et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction

(2016) Kiley W Seitz et al.   ISME Journal

Phosphorite deposits on the Namibian shelf

(2016) John S. Compton et al.   MARINE GEOLOGY

Genomic and enzymatic evidence for acetogenesis among multiple lineages of the archaeal phylum Bathyarchaeota widespread in marine sediments

(2016) Y. He et al.   Nature Microbiology

Lokiarchaeon is hydrogen dependent

(2016) Filipa L. Sousa et al.   Nature Microbiology

Quantitative Microbial Ecology through Stable Isotope Probing

(2015) Bruce A. Hungate et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Complex archaea that bridge the gap between prokaryotes and eukaryotes

(2015) Anja Spang et al.   NATURE

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Crenarchaeal heterotrophy in salt marsh sediments

(2014) Lauren M Seyler et al.   ISME Journal

The rise of oxygen in Earth’s early ocean and atmosphere

(2014) Timothy W. Lyons et al.   NATURE

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

(2014) Patrick J. Keeling et al.   PLOS BIOLOGY

LUD, a new protein domain associated with lactate utilization

(2013) William C Hwang et al.   BMC BIOINFORMATICS

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Energy conservation via electron bifurcating ferredoxin reduction and proton/Na+ translocating ferredoxin oxidation

(2012) Wolfgang Buckel et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge

(2012) S. L. Jorgensen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Acetogenesis in the Energy-Starved Deep Biosphere – A Paradox?

(2012) Mark Alexander Lever   Frontiers in Microbiology

Towards constraining H2 concentration in subseafloor sediment: A proposal for combined analysis by two distinct approaches

(2011) Yu-Shih Lin et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Acetogenesis in Deep Subseafloor Sediments of The Juan de Fuca Ridge Flank: A Synthesis of Geochemical, Thermodynamic, and Gene-based Evidence

(2010) Mark A. Lever et al.   GEOMICROBIOLOGY JOURNAL

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Detoxification of sulphidic African shelf waters by blooming chemolithotrophs

(2008) Gaute Lavik et al.   NATURE