Impact of Viral Lysis on the Composition of Bacterial Communities and Dissolved Organic Matter in Deep-Sea Sediments

Microbial transformation of virus-induced dissolved organic matter from picocyanobacteria: coupling of bacterial diversity and DOM chemodiversity

(2019) Zhao Zhao et al.   ISME Journal

Subseafloor life and its biogeochemical impacts

(2019) Steven D’Hondt et al.   Nature Communications

Microbial Processing of Sediment‐Derived Dissolved Organic Matter: Implications for Its Subsequent Biogeochemical Cycling in Overlying Seawater

(2019) Ruanhong Cai et al.   Journal of Geophysical Research-Biogeosciences

Distinct molecular signatures in dissolved organic matter produced by viral lysis of marine cyanobacteria

(2018) Xiufeng Ma et al.   ENVIRONMENTAL MICROBIOLOGY

Interactive regulations by viruses and dissolved organic matter on the bacterial community

(2017) Hongbin Liu et al.   LIMNOLOGY AND OCEANOGRAPHY

Molecular properties of deep-sea dissolved organic matter are predictable by the central limit theorem: Evidence from tandem FT-ICR-MS

(2017) Maren Zark et al.   MARINE CHEMISTRY

The Biogeographical Distribution of Benthic Roseobacter Group Members along a Pacific Transect Is Structured by Nutrient Availability within the Sediments and Primary Production in Different Oceanic Provinces

(2017) Marion Pohlner et al.   Frontiers in Microbiology

The Effects of Cropping Regimes on Fungal and Bacterial Communities of Wheat and Faba Bean in a Greenhouse Pot Experiment Differ between Plant Species and Compartment

(2017) Sandra Granzow et al.   Frontiers in Microbiology

Slow Microbial Life in the Seabed

(2016) Bo Barker Jørgensen et al.   Annual Review of Marine Science

Genetic and life-history traits associated with the distribution of prophages in bacteria

(2016) Marie Touchon et al.   ISME Journal

Selectivity of solid phase extraction of freshwater dissolved organic matter and its effect on ultrahigh resolution mass spectra

(2016) Julia Raeke et al.   Environmental Science-Processes & Impacts

The Size-Reactivity Continuum of Major Bioelements in the Ocean

(2015) Ronald Benner et al.   Annual Review of Marine Science

Bacterial diversity and community composition from seasurface to subseafloor

(2015) Emily A Walsh et al.   ISME Journal

Virus decomposition provides an important contribution to benthic deep-sea ecosystem functioning

(2015) Antonio Dell’Anno et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Method Detection Limit for the Analysis of Natural Organic Matter via Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

(2014) Thomas Riedel et al.   ANALYTICAL CHEMISTRY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Biogeochemistry of dissolved organic matter in an anoxic intertidal creek bank

(2014) Michael Seidel et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

High virus-to-cell ratios indicate ongoing production of viruses in deep subsurface sediments

(2014) Tim Engelhardt et al.   ISME Journal

Impact of Spontaneous Prophage Induction on the Fitness of Bacterial Populations and Host-Microbe Interactions

(2014) Arun M. Nanda et al.   JOURNAL OF BACTERIOLOGY

The elemental composition of virus particles: implications for marine biogeochemical cycles

(2014) Luis F. Jover et al.   NATURE REVIEWS MICROBIOLOGY

A theoretical analysis of how strain-specific viruses can control microbial species diversity

(2014) T. F. Thingstad et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differences between aerobic and anaerobic degradation of microphytobenthic biofilm-derived organic matter within intertidal sediments

(2013) Boyd A. McKew et al.   FEMS MICROBIOLOGY ECOLOGY

Molecular composition of dissolved organic matter from a wetland plant (Juncus effusus) after photochemical and microbial decomposition (1.25 yr): Common features with deep sea dissolved organic matter

(2013) Pamela E. Rossel et al.   ORGANIC GEOCHEMISTRY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Marine Viruses Exploit Their Host's Two-Component Regulatory System in Response to Resource Limitation

(2012) Qinglu Zeng et al.   CURRENT BIOLOGY

The distribution and chemical speciation of dissolved and particulate phosphorus in the Bering Sea and the Chukchi–Beaufort Seas

(2012) Peng Lin et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Global distribution of microbial abundance and biomass in subseafloor sediment

(2012) J. Kallmeyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coupled organic and inorganic carbon cycling in the deep subseafloor sediment of the northeastern Bering Sea Slope (IODP Exp. 323)

(2011) Laura M. Wehrmann et al.   CHEMICAL GEOLOGY

A simple and efficient method for the solid-phase extraction of dissolved organic matter (SPE-DOM) from seawater

(2011) Thorsten Dittmar et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Microbial Ecology of the Dark Ocean above, at, and below the Seafloor

(2011) B. N. Orcutt et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Dissolved Organic Matter in the Ocean: A Controversy Stimulates New Insights

(2011) Dennis Hansell et al.   OCEANOGRAPHY

Induction of prophages from deep-subseafloor bacteria

(2011) Tim Engelhardt et al.   Environmental Microbiology Reports

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Trade-Offs between Competition and Defense Specialists among Unicellular Planktonic Organisms: the "Killing the Winner" Hypothesis Revisited

(2010) C. Winter et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The genomic basis of trophic strategy in marine bacteria

(2009) F. M. Lauro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Growth phase-dependent global protein and metabolite profiles ofPhaeobacter gallaeciensisstrain DSM 17395, a member of the marineRoseobacter-clade

(2009) Hajo Zech et al.   PROTEOMICS

Natural Organic Matter and the Event Horizon of Mass Spectrometry

(2008) N. Hertkorn et al.   ANALYTICAL CHEMISTRY

Physical forcing and nutrient conditions associated with patterns of Chl a and phytoplankton productivity in the southeastern Bering Sea during summer

(2008) Raymond N. Sambrotto et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas?

(2008) John H Paul   ISME Journal

Major viral impact on the functioning of benthic deep-sea ecosystems

(2008) Roberto Danovaro et al.   NATURE

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH