RNA sequencing from human neutrophils reveals distinct transcriptional differences associated with chronic inflammatory states

Interferon gene expression signature in rheumatoid arthritis neutrophils correlates with a good response to TNFi therapy

(2014) Helen L. Wright et al.   RHEUMATOLOGY

Long Noncoding RNAs: Cellular Address Codes in Development and Disease

(2013) Pedro J. Batista et al.   CELL

Genome-wide association studies to advance our understanding of critical cell types and pathways in rheumatoid arthritis

(2013) Dorothée Diogo et al.   CURRENT OPINION IN RHEUMATOLOGY

Control of alternative splicing in immune responses: many regulators, many predictions, much still to learn

(2013) Nicole M. Martinez et al.   IMMUNOLOGICAL REVIEWS

Predicting long non-coding RNAs using RNA sequencing

(2013) Nicholas E. Ilott et al.   METHODS

Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis

(2013) Anne Hinks et al.   NATURE GENETICS

A Long Noncoding RNA Mediates Both Activation and Repression of Immune Response Genes

(2013) S. Carpenter et al.   SCIENCE

Genomic characterization of remission in juvenile idiopathic arthritis

(2013) Kaiyu Jiang et al.   ARTHRITIS RESEARCH & THERAPY

Current insights into neutrophil homeostasis

(2012) Stefanie Bugl et al.   Annals of the New York Academy of Sciences

Genome Regulation by Long Noncoding RNAs

(2012) John L. Rinn et al.   Annual Review of Biochemistry

RNA-SeQC: RNA-seq metrics for quality control and process optimization

(2012) David S. DeLuca et al.   BIOINFORMATICS

What does our genome encode?

(2012) J. A. Stamatoyannopoulos   GENOME RESEARCH

Detecting differential usage of exons from RNA-seq data

(2012) S. Anders et al.   GENOME RESEARCH

Increase in interleukin-8 production from circulating neutrophils upon antibiotic therapy in cystic fibrosis patients

(2012) Pasqualina Montemurro et al.   Journal of Cystic Fibrosis

Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

LNCipedia: a database for annotated human lncRNA transcript sequences and structures

(2012) Pieter-Jan Volders et al.   NUCLEIC ACIDS RESEARCH

Molecular discrimination of responders and nonresponders to anti-TNFalpha therapy in rheumatoid arthritis by etanercept

(2012) Dirk Koczan et al.   ARTHRITIS RESEARCH & THERAPY

A single nucleotide polymorphism of the adenosine deaminase, RNA-specific gene is associated with the serum triglyceride level, abdominal circumference, and serum adiponectin concentration

(2011) Ryosuke Oguro et al.   EXPERIMENTAL GERONTOLOGY

Molecular Mechanisms of Long Noncoding RNAs

(2011) Kevin C. Wang et al.   MOLECULAR CELL

Rewiring makes the difference

(2011) A. Califano   Molecular Systems Biology

The Pathogenesis of Rheumatoid Arthritis

(2011) Iain B. McInnes et al.   NEW ENGLAND JOURNAL OF MEDICINE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Regulation of IFN response gene activity during infliximab treatment in rheumatoid arthritis is associated with clinical response to treatment

(2010) Lisa GM van Baarsen et al.   ARTHRITIS RESEARCH & THERAPY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Gene expression profiling in neutrophils from children with polyarticular juvenile idiopathic arthritis

(2009) James N. Jarvis et al.   ARTHRITIS AND RHEUMATISM

Prediction of efficacy of anti-TNF biologic agent, infliximab, for rheumatoid arthritis patients using a comprehensive transcriptome analysis of white blood cells

(2009) Motohiko Tanino et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Disease-associated pathophysiologic structures in pediatric rheumatic diseases show characteristics of scale-free networks seen in physiologic systems: implications for pathogenesis and treatment

(2009) Mark Barton Frank et al.   BMC Medical Genomics

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

(2009) Mitchell Guttman et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Genomic and Transcriptional Co-Localization of Protein-Coding and Long Non-Coding RNA Pairs in the Developing Brain

(2009) Jasmina Ponjavic et al.   PLoS Genetics

Airway Inflammation in Cystic Fibrosis

(2008) Arnon Elizur et al.   CHEST

Cytokine Signaling Modules in Inflammatory Responses

(2008) John J. O'Shea et al.   IMMUNITY