Genome-based trait prediction in multi- environment breeding trials in groundnut

Translational genomics for achieving higher genetic gains in groundnut

(2020) Manish K. Pandey et al.   THEORETICAL AND APPLIED GENETICS

Sequencing of cultivated peanut, Arachis hypogaea, yields insights into genome evolution and oil improvement

(2019) Xiaoping Chen et al.   Molecular Plant

The genome sequence of segmental allotetraploid peanut Arachis hypogaea

(2019) David J. Bertioli et al.   NATURE GENETICS

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

(2019) Weijian Zhuang et al.   NATURE GENETICS

Genomic prediction of maize yield across European environmental conditions

(2019) Emilie J. Millet et al.   NATURE GENETICS

Genome-wide association study and genomic prediction analyses of drought stress tolerance in China in a collection of off-PVP maize inbred lines

(2019) Nan Wang et al.   MOLECULAR BREEDING

Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice

(2019) Aditi Bhandari et al.   PLoS One

Mitigating Aflatoxin Contamination in Groundnut through A Combination of Genetic Resistance and Post-Harvest Management Practices

(2019) Manish K. Pandey et al.   Toxins

Genotype × Environment Studies on Resistance to Late Leaf Spot and Rust in Genomic Selection Training Population of Peanut (Arachis hypogaea L.)

(2019) Sunil Chaudhari et al.   Frontiers in Plant Science

Genomic Selection Outperforms Marker Assisted Selection for Grain Yield and Physiological Traits in a Maize Doubled Haploid Population Across Water Treatments

(2018) Diego Cerrudo et al.   Frontiers in Plant Science

Investigating Drought Tolerance in Chickpea Using Genome-Wide Association Mapping and Genomic Selection Based on Whole-Genome Resequencing Data

(2018) Yongle Li et al.   Frontiers in Plant Science

Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea

(2018) Manish Roorkiwal et al.   Scientific Reports

Toward the sequence-based breeding in legumes in the post-genome sequencing era

(2018) Rajeev K. Varshney et al.   THEORETICAL AND APPLIED GENETICS

Sequencing Analysis of Genetic Loci for Resistance for Late Leaf Spot and Rust in Peanut (Arachis hypogaea L.)

(2018) Kenta Shirasawa et al.   Frontiers in Plant Science

Practical application of genomic selection in a doubled-haploid winter wheat breeding program

(2017) Jiayin Song et al.   MOLECULAR BREEDING

Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut

(2017) Josh Clevenger et al.   Molecular Plant

Genomic prediction unifies animal and plant breeding programs to form platforms for biological discovery

(2017) John M Hickey et al.   NATURE GENETICS

Genomic Selection in Plant Breeding: Methods, Models, and Perspectives

(2017) José Crossa et al.   TRENDS IN PLANT SCIENCE

Effect of Trait Heritability, Training Population Size and Marker Density on Genomic Prediction Accuracy Estimation in 22 bi-parental Tropical Maize Populations

(2017) Ao Zhang et al.   Frontiers in Plant Science

Genomic Selection for Drought Tolerance Using Genome-Wide SNPs in Maize

(2017) Mittal Shikha et al.   Frontiers in Plant Science

Development and Evaluation of a High Density Genotyping ‘Axiom_Arachis’ Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut

(2017) Manish K. Pandey et al.   Scientific Reports

Initiating maize pre-breeding programs using genomic selection to harness polygenic variation from landrace populations

(2016) Gregor Gorjanc et al.   BMC GENOMICS

QTL mapping for late leaf spot and rust resistance using an improved genetic map and extensive phenotypic data on a recombinant inbred line population in peanut (Arachis hypogaea L.)

(2016) R. M. Kolekar et al.   EUPHYTICA

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut

(2016) David John Bertioli et al.   NATURE GENETICS

Foliar fungal disease-resistant introgression lines of groundnut (Arachis hypogaeaL.) record higher pod and haulm yield in multilocation testing

(2016) Janila Pasupuleti et al.   PLANT BREEDING

Exciting journey of 10 years from genomes to fields and markets: Some success stories of genomics-assisted breeding in chickpea, pigeonpea and groundnut

(2016) Rajeev K Varshney   PLANT SCIENCE

Genomic Prediction of Seed Quality Traits Using Advanced Barley Breeding Lines

(2016) Nanna Hellum Nielsen et al.   PLoS One

Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens

(2016) Xiaoping Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic Selection in Multi-environment Crop Trials

(2016) Helena Oakey et al.   G3-Genes Genomes Genetics

A Pedigree-Based Reaction Norm Model for Prediction of Cotton Yield in Multienvironment Trials

(2015) Paulino Pérez-Rodríguez et al.   CROP SCIENCE

Marker-assisted introgression of a QTL region to improve rust resistance in three elite and popular varieties of peanut (Arachis hypogaea L.)

(2014) Rajeev K. Varshney et al.   THEORETICAL AND APPLIED GENETICS

Training set optimization under population structure in genomic selection

(2014) Julio Isidro et al.   THEORETICAL AND APPLIED GENETICS

Genomic selection: genome-wide prediction in plant improvement

(2014) Zeratsion Abera Desta et al.   TRENDS IN PLANT SCIENCE

Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics

(2013) Rajeev K. Varshney et al.   BIOTECHNOLOGY ADVANCES

Genomic, Marker-Assisted, and Pedigree-BLUP Selection Methods for β-Glucan Concentration in Elite Oat

(2013) Franco G. Asoro et al.   CROP SCIENCE

A reaction norm model for genomic selection using high-dimensional genomic and environmental data

(2013) Diego Jarquín et al.   THEORETICAL AND APPLIED GENETICS

Does genomic selection have a future in plant breeding?

(2013) Elisabeth Jonas et al.   TRENDS IN BIOTECHNOLOGY

Groundnut improvement: use of genetic and genomic tools

(2013) Pasupuleti Janila et al.   Frontiers in Plant Science

Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.)

(2012) Hui Wang et al.   BMC PLANT BIOLOGY

Genomic Prediction of Breeding Values when Modeling Genotype × Environment Interaction using Pedigree and Dense Molecular Markers

(2012) Juan Burgueño et al.   CROP SCIENCE

Whole-Genome Regression and Prediction Methods Applied to Plant and Animal Breeding

(2012) G. de los Campos et al.   GENETICS

An International Reference Consensus Genetic Map with 897 Marker Loci Based on 11 Mapping Populations for Tetraploid Groundnut (Arachis hypogaea L.)

(2012) Bhimana Gautami et al.   PLoS One

The future of livestock breeding: genomic selection for efficiency, reduced emissions intensity, and adaptation

(2012) Ben J. Hayes et al.   TRENDS IN GENETICS

Genotyping-by-Sequencing for Plant Breeding and Genetics

(2012) Jesse A. Poland et al.   Plant Genome

Advances in Arachis genomics for peanut improvement

(2011) Manish K. Pandey et al.   BIOTECHNOLOGY ADVANCES

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

Genomic Selection Accuracy for Grain Quality Traits in Biparental Wheat Populations

(2011) Elliot L. Heffner et al.   CROP SCIENCE

Genomic Selection in Plant Breeding: A Comparison of Models

(2011) Nicolas Heslot et al.   CROP SCIENCE

Quantitative trait locus analysis and construction of consensus genetic map for foliar disease resistance based on two recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.)

(2011) V. Sujay et al.   MOLECULAR BREEDING

Highly informative genic and genomic SSR markers to facilitate molecular breeding in cultivated groundnut (Arachis hypogaea)

(2011) Manish K. Pandey et al.   PLANT BREEDING

Accuracy and Training Population Design for Genomic Selection on Quantitative Traits in Elite North American Oats

(2011) Franco G. Asoro et al.   Plant Genome

The Impact of Genetic Architecture on Genome-Wide Evaluation Methods

(2010) H. D. Daetwyler et al.   GENETICS

Genome-wide association and genomic selection in animal breedingThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”.

(2010) Ben Hayes et al.   GENOME

Predicting Quantitative Traits With Regression Models for Dense Molecular Markers and Pedigree

(2009) G. de los Campos et al.   GENETICS

Genomewide selection in oil palm: increasing selection gain per unit time and cost with small populations

(2008) C. K. Wong et al.   THEORETICAL AND APPLIED GENETICS