Species-specific pace of development is associated with differences in protein stability

Moving beyond P values: data analysis with estimation graphics

(2019) Joses Ho et al.   NATURE METHODS

Transcriptional mechanisms of motor neuron development in vertebrates and invertebrates

(2019) Catarina Catela et al.   DEVELOPMENTAL BIOLOGY

Xenotransplanted Human Cortical Neurons Reveal Species-Specific Development and Functional Integration into Mouse Visual Circuits

(2019) Daniele Linaro et al.   NEURON

Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics

(2019) Christopher Barry et al.   PLoS Computational Biology

What does time mean in development?

(2018) Miki Ebisuya et al.   DEVELOPMENT

Olig2 and Hes regulatory dynamics during motor neuron differentiation revealed by single cell transcriptomics

(2018) Andreas Sagner et al.   PLOS BIOLOGY

Clustering gene expression time series data using an infinite Gaussian process mixture model

(2018) Ian C. McDowell et al.   PLoS Computational Biology

Nervous System Regionalization Entails Axial Allocation before Neural Differentiation

(2018) Vicki Metzis et al.   CELL

Nextflow enables reproducible computational workflows

(2017) Paolo Di Tommaso et al.   NATURE BIOTECHNOLOGY

2D and 3D Stem Cell Models of Primate Cortical Development Identify Species-Specific Differences in Progenitor Behavior Contributing to Brain Size

(2016) Tomoki Otani et al.   Cell Stem Cell

Encoding and decoding time in neural development

(2016) Kenichi Toma et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Ensembl 2017

(2016) Bronwen L. Aken et al.   NUCLEIC ACIDS RESEARCH

Differences and similarities between human and chimpanzee neural progenitors during cerebral cortex development

(2016) Felipe Mora-Bermúdez et al.   eLife

Morphogen rules: design principles of gradient-mediated embryo patterning

(2015) J. Briscoe et al.   DEVELOPMENT

Deterministic HOX Patterning in Human Pluripotent Stem Cell-Derived Neuroectoderm

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How to make spinal motor neurons

(2014) B. N. Davis-Dusenbery et al.   DEVELOPMENT

A theoretical framework for the regulation of Shh morphogen-controlled gene expression

(2014) M. Cohen et al.   DEVELOPMENT

Diverse Behaviors of Outer Radial Glia in Developing Ferret and Human Cortex

(2014) C. C. Gertz et al.   JOURNAL OF NEUROSCIENCE

Signalling dynamics in vertebrate segmentation

(2014) Alexis Hubaud et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Coordination of progenitor specification and growth in mouse and chick spinal cord

(2014) A. Kicheva et al.   SCIENCE

Thinking out of the dish: what to learn about cortical development using pluripotent stem cells

(2014) Jelle van den Ameele et al.   TRENDS IN NEUROSCIENCES

In Vitro Generation of Neuromesodermal Progenitors Reveals Distinct Roles for Wnt Signalling in the Specification of Spinal Cord and Paraxial Mesoderm Identity

(2014) Mina Gouti et al.   PLOS BIOLOGY

Accelerated High-Yield Generation of Limb-Innervating Motor Neurons from Human Stem Cells

(2013) M. W. Amoroso et al.   JOURNAL OF NEUROSCIENCE

RSeQC: quality control of RNA-seq experiments

(2012) Liguo Wang et al.   BIOINFORMATICS

RNA-SeQC: RNA-seq metrics for quality control and process optimization

(2012) David S. DeLuca et al.   BIOINFORMATICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Gene Regulatory Logic for Reading the Sonic Hedgehog Signaling Gradient in the Vertebrate Neural Tube

(2012) Nikolaos Balaskas et al.   CELL

Mechanistic Differences in the Transcriptional Interpretation of Local and Long-Range Shh Morphogen Signaling

(2012) Tony Oosterveen et al.   DEVELOPMENTAL CELL

Neural-specific Sox2 input and differential Gli-binding affinity provide context and positional information in Shh-directed neural patterning

(2012) K. A. Peterson et al.   GENES & DEVELOPMENT

Icy: an open bioimage informatics platform for extended reproducible research

(2012) Fabrice de Chaumont et al.   NATURE METHODS

The remarkable, yet not extraordinary, human brain as a scaled-up primate brain and its associated cost

(2012) S. Herculano-Houzel   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stochastic Modeling of Expression Kinetics Identifies Messenger Half-Lives and Reveals Sequential Waves of Co-ordinated Transcription and Decay

(2012) Filippo Cacace et al.   PLoS Computational Biology

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Proteome Half-Life Dynamics in Living Human Cells

(2011) E. Eden et al.   SCIENCE

High-dimensional posterior exploration of hydrologic models using multiple-try DREAM(ZS) and high-performance computing

(2011) Eric Laloy et al.   WATER RESOURCES RESEARCH

Retinoid-independent motor neurogenesis from human embryonic stem cells reveals a medial columnar ground state

(2011) R. Patani et al.   Nature Communications

An In silico approach for the evaluation of DNA barcodes

(2010) Gentile Ficetola et al.   BMC GENOMICS

Domain-specific control of neurogenesis achieved through patterned regulation of Notch ligand expression

(2010) U. Marklund et al.   DEVELOPMENT

The HUDSEN Atlas: a three-dimensional (3D) spatial framework for studying gene expression in the developing human brain

(2010) Janet Kerwin et al.   JOURNAL OF ANATOMY

Neurogenic radial glia in the outer subventricular zone of human neocortex

(2010) David V. Hansen et al.   NATURE

Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling

(2009) Stuart M Chambers et al.   NATURE BIOTECHNOLOGY

Treatment of Medulloblastoma with Hedgehog Pathway Inhibitor GDC-0449

(2009) Charles M. Rudin et al.   NEW ENGLAND JOURNAL OF MEDICINE

Conserved principles of mammalian transcriptional regulation revealed by RNA half-life

(2009) Caroline C. Friedel et al.   NUCLEIC ACIDS RESEARCH

Pattern formation in the vertebrate neural tube: a sonic hedgehog morphogen-regulated transcriptional network

(2008) E. Dessaud et al.   DEVELOPMENT

An intrinsic mechanism of corticogenesis from embryonic stem cells

(2008) Nicolas Gaspard et al.   NATURE

Control of segment number in vertebrate embryos

(2008) Céline Gomez et al.   NATURE