BdWRKY38 is required for the incompatible interaction of Brachypodium distachyon with the necrotrophic fungus Rhizoctonia solani

The Defense Phytohormone Signaling Network Enables Rapid, High-Amplitude Transcriptional Reprogramming during Effector-Triggered Immunity

(2018) Akira Mine et al.   PLANT CELL

OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice

(2018) Qing Liu et al.   BMC PLANT BIOLOGY

Recent Advances in Synthetic Chemical Inducers of Plant Immunity

(2018) Mian Zhou et al.   Frontiers in Plant Science

Statistical and Machine Learning Approaches to Predict Gene Regulatory Networks From Transcriptome Datasets

(2018) Keiichi Mochida et al.   Frontiers in Plant Science

Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.)

(2018) Jimmy John Lilly et al.   PLANT SCIENCE

Salicylic acid-dependent immunity contributes to resistance against Rhizoctonia solani , a necrotrophic fungal agent of sheath blight, in rice and Brachypodium distachyon

(2017) Yusuke Kouzai et al.   NEW PHYTOLOGIST

Expression profiling of marker genes responsive to the defence-associated phytohormones salicylic acid, jasmonic acid and ethylene in Brachypodium distachyon

(2016) Yusuke Kouzai et al.   BMC PLANT BIOLOGY

The mid-developmental transition and the evolution of animal body plans

(2016) Michal Levin et al.   NATURE

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

(2016) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae

(2016) Seon-Hee Hwang et al.   PLANT CELL REPORTS

Tissue-specific expression of Arabidopsis NPR1 gene in rice for sheath blight resistance without compromising phenotypic cost

(2016) Kutubuddin Ali Molla et al.   PLANT SCIENCE

OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani

(2016) Xixu Peng et al.   Rice

WRKY Transcription Factors: Molecular Regulation and Stress Responses in Plants

(2016) Ujjal J. Phukan et al.   Frontiers in Plant Science

Comprehensive quantification and genome survey reveal the presence of novel phytohormone action modes in red seaweeds

(2015) Koji Mikami et al.   JOURNAL OF APPLIED PHYCOLOGY

Transcriptional networks in plant immunity

(2015) Kenichi Tsuda et al.   NEW PHYTOLOGIST

Rice WRKY4 acts as a transcriptional activator mediating defense responses toward Rhizoctonia solani, the causing agent of rice sheath blight

(2015) Haihua Wang et al.   PLANT MOLECULAR BIOLOGY

Overexpression of GhWRKY27a reduces tolerance to drought stress and resistance to Rhizoctonia solani infection in transgenic Nicotiana benthamiana

(2015) Yan Yan et al.   Frontiers in Physiology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Molecular and genetic aspects of controlling the soilborne necrotrophic pathogens Rhizoctonia and Pythium

(2014) Patricia A. Okubara et al.   PLANT SCIENCE

Overexpression of Phosphomimic Mutated OsWRKY53 Leads to Enhanced Blast Resistance in Rice

(2014) Tetsuya Chujo et al.   PLoS One

Expression Profiling during Arabidopsis/Downy Mildew Interaction Reveals a Highly-Expressed Effector That Attenuates Responses to Salicylic Acid

(2014) Shuta Asai et al.   PLoS Pathogens

Development of disease-resistant rice using regulatory components of induced disease resistance

(2014) Hiroshi Takatsuji   Frontiers in Plant Science

Control of foliar pathogens of spring barley using a combination of resistance elicitors

(2014) Dale R. Walters et al.   Frontiers in Plant Science

WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance

(2013) Naoki Yokotani et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Gossypium hirsutum WRKY gene GhWRKY39-1 promotes pathogen infection defense responses and mediates salt stress tolerance in transgenic Nicotiana benthamiana

(2013) Weina Shi et al.   PLANT CELL REPORTS

OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus

(2013) Tetsuya Chujo et al.   PLANT MOLECULAR BIOLOGY

Transcriptional Profiling of Rice Early Response to Magnaporthe oryzae Identified OsWRKYs as Important Regulators in Rice Blast Resistance

(2013) Tong Wei et al.   PLoS One

The evolution and pathogenic mechanisms of the rice sheath blight pathogen

(2013) Aiping Zheng et al.   Nature Communications

OsWRKY22, a monocot WRKY gene, plays a role in the resistance response to blast

(2012) PAMELA ABBRUSCATO et al.   MOLECULAR PLANT PATHOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Novel Plant Immune-Priming Compounds Identified via High-Throughput Chemical Screening Target Salicylic Acid Glucosyltransferases in Arabidopsis

(2012) Y. Noutoshi et al.   PLANT CELL

Constitutive expression of rice WRKY30 gene increases the endogenous jasmonic acid accumulation, PR gene expression and resistance to fungal pathogens in rice

(2012) Xixu Peng et al.   PLANTA

Evaluation of the Use of the Polyubiquitin Genes, Ubi4 and Ubi10 as Reference Genes for Expression Studies in Brachypodium distachyon

(2012) John P. Chambers et al.   PLoS One

RNA-Seq analysis in MeV

(2011) E. A. Howe et al.   BIOINFORMATICS

Rice WRKY45 plays important roles in fungal and bacterial disease resistance

(2011) MASAKI SHIMONO et al.   MOLECULAR PLANT PATHOLOGY

Interfamily Transfer of Tomato Ve1 Mediates Verticillium Resistance in Arabidopsis

(2011) E. F. Fradin et al.   PLANT PHYSIOLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Abscisic Acid Interacts Antagonistically with Salicylic Acid Signaling Pathway in Rice–Magnaporthe griseaInteraction

(2010) Chang-Jie Jiang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

(2010) Vân Anh Huynh-Thu et al.   PLoS One

Salicylic Acid, a Multifaceted Hormone to Combat Disease

(2009) A. Corina Vlot et al.   Annual Review of Phytopathology

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Salicylic acid deficiency in NahG transgenic lines and sid2 mutants increases seed yield in the annual plant Arabidopsis thaliana

(2009) M. E. Abreu et al.   JOURNAL OF EXPERIMENTAL BOTANY

A protocol for Agrobacterium-mediated transformation of Brachypodium distachyon community standard line Bd21

(2009) Sílvia C Alves et al.   Nature Protocols

OsWRKY62 is a Negative Regulator of Basal and Xa21-Mediated Defense against Xanthomonas oryzae pv. oryzae in Rice

(2008) Ying Peng et al.   Molecular Plant