Biological physics by high-speed atomic force microscopy

Advances in molecular simulations of protein mechanical properties and function

(2020) Florian Franz et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Heterogeneous and rate-dependent streptavidin–biotin unbinding revealed by high-speed force spectroscopy and atomistic simulations

(2019) Felix Rico et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An arsenal of methods for the experimental characterization of intrinsically disordered proteins – How to choose and combine them?

(2019) Antoine Schramm et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Cellular nanoscale stiffness patterns governed by intracellular forces

(2019) Nicola Mandriota et al.   NATURE MATERIALS

α-Helix Unwinding as Force Buffer in Spectrins

(2018) Hirohide Takahashi et al.   ACS Nano

Membrane Diffusion Occurs by Continuous-Time Random Walk Sustained by Vesicular Trafficking

(2018) Maria Goiko et al.   BIOPHYSICAL JOURNAL

History, rare, and multiple events of mechanical unfolding of repeat proteins

(2018) Fidan Sumbul et al.   JOURNAL OF CHEMICAL PHYSICS

High-speed photothermal off-resonance atomic force microscopy reveals assembly routes of centriolar scaffold protein SAS-6

(2018) Adrian P. Nievergelt et al.   Nature Nanotechnology

Dynamic clustering of dynamin-amphiphysin helices regulates membrane constriction and fission coupled with GTP hydrolysis

(2018) Tetsuya Takeda et al.   eLife

An iris diaphragm mechanism to gate a cyclic nucleotide-gated ion channel

(2018) Arin Marchesi et al.   Nature Communications

“Rafts”: A nickname for putative transient nanodomains

(2018) Félix M. Goñi   CHEMISTRY AND PHYSICS OF LIPIDS

Dynamic disorder can explain non-exponential kinetics of fast protein mechanical unfolding

(2017) Bogdan I. Costescu et al.   JOURNAL OF STRUCTURAL BIOLOGY

Optimizing force spectroscopy by modifying commercial cantilevers: Improved stability, precision, and temporal resolution

(2017) Devin T. Edwards et al.   JOURNAL OF STRUCTURAL BIOLOGY

Dynamic subunit turnover in ESCRT-III assemblies is regulated by Vps4 to mediate membrane remodelling during cytokinesis

(2017) Beata E. Mierzwa et al.   NATURE CELL BIOLOGY

Cell mechanics: The benefits of getting high

(2017) Klaus Kroy   Nature Physics

High-frequency microrheology reveals cytoskeleton dynamics in living cells

(2017) Annafrancesca Rigato et al.   Nature Physics

Dynamic remodeling of the dynamin helix during membrane constriction

(2017) Adai Colom et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hidden dynamics in the unfolding of individual bacteriorhodopsin proteins

(2017) Hao Yu et al.   SCIENCE

Glasslike Membrane Protein Diffusion in a Crowded Membrane

(2016) Ignacio Munguira et al.   ACS Nano

Pore-forming toxins: Properties, diversity, and uses as tools to image sphingomyelin and ceramide phosphoethanolamine

(2016) Akiko Yamaji-Hasegawa et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Kinetic Ductility and Force-Spike Resistance of Proteins from Single-Molecule Force Spectroscopy

(2016) Pilar Cossio et al.   BIOPHYSICAL JOURNAL

High-speed atomic force microscopy shows that annexin V stabilizes membranes on the second timescale

(2016) Atsushi Miyagi et al.   Nature Nanotechnology

Directly measuring single-molecule heterogeneity using force spectroscopy

(2016) Michael Hinczewski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The physics of pulling polyproteins: a review of single molecule force spectroscopy using the AFM to study protein unfolding

(2016) Megan L Hughes et al.   REPORTS ON PROGRESS IN PHYSICS

Temperature-Controlled High-Speed AFM: Real-Time Observation of Ripple Phase Transitions

(2016) Hirohide Takahashi et al.   Small

Relaxation of Loaded ESCRT-III Spiral Springs Drives Membrane Deformation

(2015) Nicolas Chiaruttini et al.   CELL

Imaging and three-dimensional reconstruction of chemical groups inside a protein complex using atomic force microscopy

(2015) Duckhoe Kim et al.   Nature Nanotechnology

Imaging viscoelastic properties of live cells by AFM: power-law rheology on the nanoscale

(2015) Fabian M. Hecht et al.   Soft Matter

How cryo-EM is revolutionizing structural biology

(2015) Xiao-chen Bai et al.   TRENDS IN BIOCHEMICAL SCIENCES

Dynamic phase coexistence in glass–forming liquids

(2015) Raffaele Pastore et al.   Scientific Reports

Filming Biomolecular Processes by High-Speed Atomic Force Microscopy

(2014) Toshio Ando et al.   CHEMICAL REVIEWS

High-Speed AFM Images of Thermal Motion Provide Stiffness Map of Interfacial Membrane Protein Moieties

(2014) Johannes Preiner et al.   NANO LETTERS

IgGs are made for walking on bacterial and viral surfaces

(2014) Johannes Preiner et al.   Nature Communications

Theory of rapid force spectroscopy

(2014) Jakob T. Bullerjahn et al.   Nature Communications

Phosphorylation-Coupled Intramolecular Dynamics of Unstructured Regions in Chromatin Remodeler FACT

(2013) Manami Hashimoto et al.   BIOPHYSICAL JOURNAL

Single-molecule spectroscopy of protein folding dynamics—expanding scope and timescales

(2013) Benjamin Schuler et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

High-Speed Atomic Force Microscopy

(2013) Toshio Ando et al.   JAPANESE JOURNAL OF APPLIED PHYSICS

Frustration-induced protein intrinsic disorder

(2013) Katsuyoshi Matsushita et al.   JOURNAL OF CHEMICAL PHYSICS

Multiparametric imaging of biological systems by force-distance curve–based AFM

(2013) Yves F Dufrêne et al.   NATURE METHODS

High-speed atomic force microscope combined with single-molecule fluorescence microscope

(2013) Shingo Fukuda et al.   REVIEW OF SCIENTIFIC INSTRUMENTS

High-Speed Force Spectroscopy Unfolds Titin at the Velocity of Molecular Dynamics Simulations

(2013) F. Rico et al.   SCIENCE

A hybrid high-speed atomic force–optical microscope for visualizing single membrane proteins on eukaryotic cells

(2013) Adai Colom et al.   Nature Communications

Multiple barriers in forced rupture of protein complexes

(2012) Changbong Hyeon et al.   JOURNAL OF CHEMICAL PHYSICS

High-speed atomic force microscopy coming of age

(2012) Toshio Ando   NANOTECHNOLOGY

Characterization of the motion of membrane proteins using high-speed atomic force microscopy

(2012) Ignacio Casuso et al.   Nature Nanotechnology

Interpreting the widespread nonlinear force spectra of intermolecular bonds

(2012) R. W. Friddle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiscale modeling and mechanics of filamentous actin cytoskeleton

(2011) Hidetaka Yamaoka et al.   Biomechanics and Modeling in Mechanobiology

Velocity-Dependent Mechanical Unfolding of Bacteriorhodopsin Is Governed by a Dynamic Interaction Network

(2011) Christian Kappel et al.   BIOPHYSICAL JOURNAL

Ergodic and nonergodic processes coexist in the plasma membrane as observed by single-molecule tracking

(2011) A. V. Weigel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Speed Atomic Force Microscopy Reveals Rotary Catalysis of Rotorless F1-ATPase

(2011) T. Uchihashi et al.   SCIENCE

A nanomechanical interface to rapid single-molecule interactions

(2011) Mingdong Dong et al.   Nature Communications

A “Force Buffer” Protecting Immunoglobulin Titin

(2010) João M. Nunes et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Mobility of BtuB and OmpF in the Escherichia coli Outer Membrane: Implications for Dynamic Formation of a Translocon Complex

(2010) Jeff Spector et al.   BIOPHYSICAL JOURNAL

Experimental Evidence for Membrane-Mediated Protein-Protein Interaction

(2010) Ignacio Casuso et al.   BIOPHYSICAL JOURNAL

Video imaging of walking myosin V by high-speed atomic force microscopy

(2010) Noriyuki Kodera et al.   NATURE

High-speed atomic force microscopy shows dynamic molecular processes in photoactivated bacteriorhodopsin

(2010) Mikihiro Shibata et al.   Nature Nanotechnology

Single-Molecule Dynamics of the DNA−EcoRII Protein Complexes Revealed with High-Speed Atomic Force Microscopy

(2009) Jamie L. Gilmore et al.   BIOCHEMISTRY

Elucidating Anomalous Protein Diffusion in Living Cells with Fluorescence Correlation Spectroscopy—Facts and Pitfalls

(2009) Nina Malchus et al.   JOURNAL OF FLUORESCENCE

Discovery Through the Computational Microscope

(2009) Eric H. Lee et al.   STRUCTURE

Visualization of Intrinsically Disordered Regions of Proteins by High-Speed Atomic Force Microscopy

(2008) Atsushi Miyagi et al.   CHEMPHYSCHEM

Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy

(2008) Keir C Neuman et al.   NATURE METHODS

Unified Model of Dynamic Forced Barrier Crossing in Single Molecules

(2008) Raymond W. Friddle   PHYSICAL REVIEW LETTERS

Theory, analysis, and interpretation of single-molecule force spectroscopy experiments

(2008) O. K. Dudko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA