Accessibility and conservation: General features of bacterial small RNA–mRNA interactions?
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Title
Accessibility and conservation: General features of bacterial small RNA–mRNA interactions?
Authors
Keywords
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Journal
RNA Biology
Volume 9, Issue 7, Pages 954-965
Publisher
Informa UK Limited
Online
2012-07-06
DOI
10.4161/rna.20294
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Note: Only part of the references are listed.- Global or local? Predicting secondary structure and accessibility in mRNAs
- (2012) Sita J. Lange et al. NUCLEIC ACIDS RESEARCH
- LocARNA-P: Accurate boundary prediction and improved detection of structural RNAs
- (2012) S. Will et al. RNA
- RNA Accessibility in cubic time
- (2011) Stephan H Bernhart et al. Algorithms for Molecular Biology
- The sufficient minimal set of miRNA seed types
- (2011) Daniel C. Ellwanger et al. BIOINFORMATICS
- Fast accessibility-based prediction of RNA–RNA interactions
- (2011) Hakim Tafer et al. BIOINFORMATICS
- Accessibility and Evolutionary Conservation Mark Bacterial Small-RNA Target-Binding Regions
- (2011) A. Peer et al. JOURNAL OF BACTERIOLOGY
- Regulation by Small RNAs in Bacteria: Expanding Frontiers
- (2011) Gisela Storz et al. MOLECULAR CELL
- Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA
- (2011) Cynthia M. Sharma et al. MOLECULAR MICROBIOLOGY
- Hfq and its constellation of RNA
- (2011) Jörg Vogel et al. NATURE REVIEWS MICROBIOLOGY
- The small RNA SgrS controls sugar–phosphate accumulation by regulating multiple PTS genes
- (2011) Jennifer B. Rice et al. NUCLEIC ACIDS RESEARCH
- Fast prediction of RNA-RNA interaction
- (2010) Raheleh Salari et al. Algorithms for Molecular Biology
- Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions
- (2010) Stefan E Seemann et al. Algorithms for Molecular Biology
- PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences
- (2010) Stefan E. Seemann et al. BIOINFORMATICS
- Recognition of heptameric seed sequence underlies multi-target regulation by RybB small RNA in Salmonella enterica
- (2010) Roberto Balbontín et al. MOLECULAR MICROBIOLOGY
- Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA
- (2010) K. Papenfort et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A small RNA promotes siderophore production through transcriptional and metabolic remodeling
- (2010) H. Salvail et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Computational prediction of sRNAs and their targets in bacteria
- (2010) Rolf Backofen et al. RNA Biology
- sRNATarBase: A comprehensive database of bacterial sRNA targets verified by experiments
- (2010) Y. Cao et al. RNA
- Bacterial Small RNA Regulators: Versatile Roles and Rapidly Evolving Variations
- (2010) S. Gottesman et al. Cold Spring Harbor Perspectives in Biology
- Partition function and base pairing probabilities for RNA–RNA interaction prediction
- (2009) Fenix W. D. Huang et al. BIOINFORMATICS
- A partition function algorithm for interacting nucleic acid strands
- (2009) Hamidreza Chitsaz et al. BIOINFORMATICS
- Seed-based IntaRNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1
- (2009) Andreas S. Richter et al. BIOINFORMATICS
- Regulatory RNAs in Bacteria
- (2009) Lauren S. Waters et al. CELL
- Experimental approaches for the discovery and characterization of regulatory small RNA
- (2009) Cynthia Mira Sharma et al. CURRENT OPINION IN MICROBIOLOGY
- Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA
- (2009) Guillaume Desnoyers et al. EMBO JOURNAL
- Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA
- (2009) Kai Papenfort et al. MOLECULAR MICROBIOLOGY
- The transcription unit architecture of the Escherichia coli genome
- (2009) Byung-Kwan Cho et al. NATURE BIOTECHNOLOGY
- Non-coding RNA annotation of the genome of Trichoplax adhaerens
- (2009) J. Hertel et al. NUCLEIC ACIDS RESEARCH
- The integrated microbial genomes system: an expanding comparative analysis resource
- (2009) Victor M. Markowitz et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli
- (2009) Alfredo Mendoza-Vargas et al. PLoS One
- IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions
- (2008) Anke Busch et al. BIOINFORMATICS
- Recent developments in the MAFFT multiple sequence alignment program
- (2008) K. Katoh et al. BRIEFINGS IN BIOINFORMATICS
- Most mammalian mRNAs are conserved targets of microRNAs
- (2008) R. C. Friedman et al. GENOME RESEARCH
- Small RNA Binding to 5′ mRNA Coding Region Inhibits Translational Initiation
- (2008) Marie Bouvier et al. MOLECULAR CELL
- The 5′ end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator
- (2008) Maude Guillier et al. NUCLEIC ACIDS RESEARCH
- NCBI Reference Sequences: current status, policy and new initiatives
- (2008) K. D. Pruitt et al. NUCLEIC ACIDS RESEARCH
- Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq
- (2008) Alexandra Sittka et al. PLoS Genetics
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