Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space

Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes

(2011) Niina Haiminen et al.   BMC GENOMICS

Assemblathon 1: A competitive assessment of de novo short read assembly methods

(2011) D. Earl et al.   GENOME RESEARCH

Barcoding bias in high-throughput multiplex sequencing of miRNA

(2011) S. Alon et al.   GENOME RESEARCH

GAGE: A critical evaluation of genome assemblies and assembly algorithms

(2011) S. L. Salzberg et al.   GENOME RESEARCH

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

An Improved Consensus Linkage Map of Barley Based on Flow-Sorted Chromosomes and Single Nucleotide Polymorphism Markers

(2011) María Muñoz-Amatriaín et al.   Plant Genome

Reptile: representative tiling for short read error correction

(2010) X. Yang et al.   BIOINFORMATICS

Compressed Genotyping

(2010) Yaniv Erlich et al.   IEEE TRANSACTIONS ON INFORMATION THEORY

Identification of rare alleles and their carriers using compressed se(que)nsing

(2010) N. Shental et al.   NUCLEIC ACIDS RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Development and implementation of high-throughput SNP genotyping in barley

(2009) Timothy J Close et al.   BMC GENOMICS

Overlapping pools for high-throughput targeted resequencing

(2009) S. Prabhu et al.   GENOME RESEARCH

DNA Sudoku--harnessing high-throughput sequencing for multiplexed specimen analysis

(2009) Y. Erlich et al.   GENOME RESEARCH

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies

(2008) I. Hajirasouliha et al.   BIOINFORMATICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Identification of genetic variants using bar-coded multiplexed sequencing

(2008) David W Craig et al.   NATURE METHODS