Refined analysis of the Campylobacter jejuni iron-dependent/independent Fur- and PerR-transcriptomes

Role of environmental survival in transmission ofCampylobacter jejuni

(2014) Christina Bronowski et al.   FEMS MICROBIOLOGY LETTERS

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

(2013) Weijun Luo et al.   BIOINFORMATICS

The Transcriptional Landscape of Campylobacter jejuni under Iron Replete and Iron Limited Growth Conditions

(2013) James Butcher et al.   PLoS One

How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

(2012) Brian J Haas et al.   BMC GENOMICS

Peroxide-Sensing Transcriptional Regulators in Bacteria

(2012) J. M. Dubbs et al.   JOURNAL OF BACTERIOLOGY

Structure and regulon of Campylobacter jejuni ferric uptake regulator Fur define apo-Fur regulation

(2012) J. Butcher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

Hive plots--rational approach to visualizing networks

(2011) M. Krzywinski et al.   BRIEFINGS IN BIOINFORMATICS

Regulation of perR Expression by Iron and PerR in Campylobacter jejuni

(2011) Minkyeong Kim et al.   JOURNAL OF BACTERIOLOGY

Cj1386 Is an Ankyrin-Containing Protein Involved in Heme Trafficking to Catalase in Campylobacter jejuni

(2011) A. Flint et al.   JOURNAL OF BACTERIOLOGY

RSAT 2011: regulatory sequence analysis tools

(2011) M. Thomas-Chollier et al.   NUCLEIC ACIDS RESEARCH

Profound differences in the transcriptome of Campylobacter jejuni grown in two different, widely used, microaerobic atmospheres

(2011) Amy John et al.   RESEARCH IN MICROBIOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

GAGE: generally applicable gene set enrichment for pathway analysis

(2009) Weijun Luo et al.   BMC BIOINFORMATICS

Characterization of the oxidative stress stimulon and PerR regulon of Campylobacter jejuni

(2009) Kiran Palyada et al.   BMC GENOMICS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Utilization of Lactoferrin-Bound and Transferrin-Bound Iron by Campylobacter jejuni

(2008) C. E. Miller et al.   JOURNAL OF BACTERIOLOGY

Pyruvate relieves the necessity of high induction levels of catalase and enables Campylobacter jejuni to grow under fully aerobic conditions

(2008) L. Verhoeff-Bakkenes et al.   LETTERS IN APPLIED MICROBIOLOGY