Identification of new members of the MAPK gene family in plants shows diverse conserved domains and novel activation loop variants

Identification and analysis of MKK and MPK gene families in canola (Brassica napus L.)

(2013) Wanwan Liang et al.   BMC GENOMICS

Pinda: A Web service for detection and analysis of intraspecies gene duplication events

(2013) Dimitrios-Georgios Kontopoulos et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Genome-wide identification and expression analysis of MAPK and MAPKK gene family in Malus domestica

(2013) Shizhong Zhang et al.   GENE

Identification of Global Ferredoxin Interaction Networks inChlamydomonas reinhardtii

(2013) Erin A. Peden et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Functional and evolutionary implications of gene orthology

(2013) Toni Gabaldón et al.   NATURE REVIEWS GENETICS

Genome-Wide Analysis of Mitogen-Activated Protein Kinase Gene Family in Maize

(2013) Yukun Liu et al.   PLANT MOLECULAR BIOLOGY REPORTER

Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins

(2013) Stefka Tyanova et al.   PLoS Computational Biology

Postal code for a plant MAPK

(2012) Brian E. Ellis   BIOCHEMICAL JOURNAL

Massive expansion of the calpain gene family in unicellular eukaryotes

(2012) Sen Zhao et al.   BMC EVOLUTIONARY BIOLOGY

MAPK-dependent JA and SA signalling in Nicotiana attenuata affects plant growth and fitness during competition with conspecifics

(2012) Stefan Meldau et al.   BMC PLANT BIOLOGY

CrMPK3, a mitogen activated protein kinase from Catharanthus roseus and its possible role in stress induced biosynthesis of monoterpenoid indole alkaloids

(2012) Susheel Raina et al.   BMC PLANT BIOLOGY

Dual-specificity MAP kinase phosphatases (MKPs)

(2012) Christopher J. Caunt et al.   FEBS Journal

Phosphorylation and Stabilization ofArabidopsisMAP Kinase Phosphatase 1 in Response to UV-B Stress

(2012) Marina A. González Besteiro et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural Basis for the Regulation of Protein Kinase A by Activation Loop Phosphorylation

(2012) Jon M. Steichen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Substrate Recognition of PLCγ1 via a Specific Docking Surface on Itk

(2012) Qian Xie et al.   JOURNAL OF MOLECULAR BIOLOGY

OsWRKY30 is activated by MAP kinases to confer drought tolerance in rice

(2012) Huaishun Shen et al.   PLANT MOLECULAR BIOLOGY

Exploring the evolutionary path of plant MAPK networks

(2012) Róbert Dóczi et al.   TRENDS IN PLANT SCIENCE

Strain energy in enzyme–substrate binding: An energetic insight into the flexibility versus rigidity of enzyme active site

(2012) Xinchun Guo et al.   Computational and Theoretical Chemistry

Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs

(2012) Adrian M. Altenhoff et al.   PLoS Computational Biology

Phylogenomic Analysis Reveals Dynamic Evolutionary History of the Drosophila Heterochromatin Protein 1 (HP1) Gene Family

(2012) Mia T. Levine et al.   PLoS Genetics

Toward a Comprehensive Phylogenetic Reconstruction of the Evolutionary History of Mitogen-Activated Protein Kinases in the Plant Kingdom

(2012) Philipp Janitza et al.   Frontiers in Plant Science

The evolutionary history of the catenin gene family during metazoan evolution

(2011) Zi-Ming Zhao et al.   BMC EVOLUTIONARY BIOLOGY

Positional orthology: putting genomic evolutionary relationships into context

(2011) C. N. Dewey   BRIEFINGS IN BIOINFORMATICS

Structural Analyses of Covalent Enzyme–Substrate Analog Complexes Reveal Strengths and Limitations of De Novo Enzyme Design

(2011) Ling Wang et al.   JOURNAL OF MOLECULAR BIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

SMART 7: recent updates to the protein domain annotation resource

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Organisation of the plant genome in chromosomes

(2011) J. S. Pat Heslop-Harrison et al.   PLANT JOURNAL

Evolutionary History of the Vertebrate Mitogen Activated Protein Kinases Family

(2011) Meng Li et al.   PLoS One

The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants

(2011) J. A. Banks et al.   SCIENCE

Mitogen-Activated Protein Kinase Signaling in Plants

(2010) Maria Cristina et al.   Annual Review of Plant Biology

Insights from the Comparison of Plant Genome Sequences

(2010) Andrew H. Paterson et al.   Annual Review of Plant Biology

Genomic evolution and complexity of the Anaphase-promoting Complex (APC) in land plants

(2010) Marcelo de F Lima et al.   BMC PLANT BIOLOGY

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

(2010) J. Mark Cock et al.   NATURE

Structural and Functional Divergence of a 1-Mb Duplicated Region in the Soybean (Glycine max) Genome and Comparison to an Orthologous Region from Phaseolus vulgaris

(2010) J.-Y. Lin et al.   PLANT CELL

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

Extensive Functional Diversification of the Populus Glutathione S-Transferase Supergene Family

(2009) T. Lan et al.   PLANT CELL

Activation loop phosphorylation of the atypical MAP kinases ERK3 and ERK4 is required for binding, activation and cytoplasmic relocalization of MK5

(2008) Paul Déléris et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Grass Genome Evolution

(2008) N. A. Eckardt   PLANT CELL

The F-Box Gene Family Is Expanded in Herbaceous Annual Plants Relative to Woody Perennial Plants

(2008) X. Yang et al.   PLANT PHYSIOLOGY

Abscisic acid and hydrogen peroxide induce a novel maize group C MAP kinase gene, ZmMPK7, which is responsible for the removal of reactive oxygen species

(2008) Xiao-juan Zong et al.   PLANTA