Ribosome profiling reveals translation control as a key mechanism generating differential gene expression in Trypanosoma cruzi

Gene expression regulation in trypanosomatids

(2015) Javier G. De Gaudenzi et al.   Essays in Biochemistry

Ribosome profiling: new views of translation, from single codons to genome scale

(2014) Nicholas T. Ingolia   NATURE REVIEWS GENETICS

Comparative ribosome profiling reveals extensive translational complexity in different Trypanosoma brucei life cycle stages

(2014) Juan-José Vasquez et al.   NUCLEIC ACIDS RESEARCH

eIF5A and EF-P: two unique translation factors are now traveling the same road

(2014) Danuza Rossi et al.   Wiley Interdisciplinary Reviews-RNA

Eukaryotic initiation factor 5A dephosphorylation is required for translational arrest in stationary phase cells

(2013) Janete Chung et al.   BIOCHEMICAL JOURNAL

Characterization of two different Asf1 histone chaperones with distinct cellular localizations and functions in Trypanosoma brucei

(2013) B. Pascoalino et al.   NUCLEIC ACIDS RESEARCH

Genomic Analysis of Sequence-Dependent DNA Curvature in Leishmania

(2013) Pablo Smircich et al.   PLoS One

The Regulation of Trypanosome Gene Expression by RNA-Binding Proteins

(2013) Christine Clayton   PLoS Pathogens

Regulatory elements in the 3′ untranslated region of the GP82 glycoprotein are responsible for its stage-specific expression in Trypanosoma cruzi metacyclic trypomastigotes

(2012) Ethel Bayer-Santos et al.   ACTA TROPICA

Observation of dually decoded regions of the human genome using ribosome profiling data

(2012) A. M. Michel et al.   GENOME RESEARCH

Multigene Families in Trypanosoma cruzi and Their Role in Infectivity

(2012) Luis Miguel De Pablos et al.   INFECTION AND IMMUNITY

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

(2012) Nicholas T Ingolia et al.   Nature Protocols

Comparative SILAC Proteomic Analysis of Trypanosoma brucei Bloodstream and Procyclic Lifecycle Stages

(2012) Michael D. Urbaniak et al.   PLoS One

Quantitative proteomics of Trypanosoma cruzi during metacyclogenesis

(2012) Lyris Martins Franco de Godoy et al.   PROTEOMICS

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

(2011) Nicholas T. Ingolia et al.   CELL

Developmental regulation of gene expression in the absence of transcriptional control: The case of kinetoplastids

(2011) Susanne Kramer   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Eukaryotic systematics: a user's guide for cell biologists and parasitologists

(2011) GISELLE WALKER et al.   PARASITOLOGY

Genomic Analyses, Gene Expression and Antigenic Profile of the Trans-Sialidase Superfamily of Trypanosoma cruzi Reveal an Undetected Level of Complexity

(2011) Leandro M. Freitas et al.   PLoS One

The role of the 5'-3' exoribonuclease XRNA in transcriptome-wide mRNA degradation

(2011) T. Manful et al.   RNA

Proteomic analysis reveals the dynamic association of proteins with translated mRNAs in Trypanosoma cruzi

(2010) Lysangela R. Alves et al.   GENE

Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites

(2010) Tim Nicolai Siegel et al.   NUCLEIC ACIDS RESEARCH

The Transcriptome of the Human Pathogen Trypanosoma brucei at Single-Nucleotide Resolution

(2010) Nikolay G. Kolev et al.   PLoS Pathogens

Spliced Leader Trapping Reveals Widespread Alternative Splicing Patterns in the Highly Dynamic Transcriptome of Trypanosoma brucei

(2010) Daniel Nilsson et al.   PLoS Pathogens

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Proteomic analysis of the Trypanosoma cruzi ribosomal proteins

(2009) Maximiliano Juri Ayub et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree

(2009) T. Cavalier-Smith   Biology Letters

The steady-state transcriptome of the four major life-cycle stages of Trypanosoma cruzi

(2009) Todd A Minning et al.   BMC GENOMICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

Stage-specific expression of Trypanosoma cruzi trans-sialidase involves highly conserved 3′ untranslated regions

(2008) Adriana V. Jäger et al.   FEMS MICROBIOLOGY LETTERS